Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01614 ATGGGAACGAGCGGATTTCGTGGTTATTTGCTGCTCATTATATGGGTTTCTCTTCTTCTGCGGTTTAGACCTTGCGCCGCTGGTTTTCAGAGCGTTGGGCAGATTTCTCCTGGGCTTCAAGGAACTCAAATGAATTGGGTCGATCACGATGGGGTGTTTCTTCGATCTAATAACTCTGAATTTGGATTTGGATTCACTAATCAACAGGATGTAACGCAGTATTATCTAGCGATTATTCACTTGAGTAGCAGGAGTATTGTCTGGACTGCGAATCAGGCCTCGCCGGTTACGACTTCGGATAAATTTTTGTTTGATGAGAACGGTAATGTAGTTTTATATCATGAGAGCAATGTGGTTTGGTCTACGAACACTGCGAATAAAGGAGTTTCTGCTCTTGCGTTGAGGGATTCGGGAAATTTGGTTTTGTTTGGGAGTGATAATGCAGTAATTTGGGAAAGTTTTGGCCATCCGACTGATACACTTTTGTCGAATCAAGGTTTTGTTGAGGGAATGAGACTTGTAAGTAAGCCTGATTCCAATAATTTGACGTATTTTCTGGAATTAAAATCTGGGGATATGGTTTTGTATTCAGGATTCAAAACTCCACAACCGTATTGGTCAATGAGTAGAGAGAATCGCAAAACGATTAACAAAGATGGTGGGTCTGTAATCTCTGCAACTCTAACAGCAAACTCGTGGAATTTCCATGGCGAAAATGATGTTTTACTCTGGCAATTTGCTTTCTCAACTAATACTGATTCAAACGCTACATGGACTGCGGTTCTGGGTAACGATGGATTTATCTCCTTTTACAAGCTTCAAGATGGTGGGTCTGGAGATGCTTCGTCCATTCGAATTCCTGAAGATCCTTGTGGAACACCAGAGCCATGTGGGACTAATTTTATCTGTTACAGTGAAAAAAAATGCCTCTGTCCTTCAATTCTTGGCTCCCGTCCAAATTGCCAAACTGGGATTACTTCGCCGTGTGATCAATCTGCTGGACCTGTTGAGCTTGTGGAGTCTCAGGATAAGATTGGTTATTTTGCACTTCAATTCATGCAGCCCTCTTCGAAAACAGATTTGGAGAATTGCAAATCCTCTTGCAGAAGTAACTGTTCTTGTATTGCTCTGTTTTTCCAAGCGAGTACAGGGGGTTGTTTCTTGTTTGATGAGATTGGTGGGTTTCTAAATTCGAAAAATTCCGAAGTCGTTTCGTACGTAAAACTGTTGAAAAACGGAGAAAACGGTGAAAACAATGGCGCAAATGGAAATGGTGGAAAGAACTCAATCCCTGCGATTCTGGGTATTGCTTTTTCCACTGTGATTGTCATTTGTGTTCTGATTTACGTCGGATTTCGATACGTTAGAAAGAAGAAAGAACCTCCAGAACCTGCTCAAGAGAGTTCAGAAGAAGAGAATTTCTTAGAGGGGCTTTCGGGAGCTCCAATTCGTTACAGTTACAACGATCTTCAAACTGCCACGGATAATTTCTCGGTGAAACTCGGACAAGGTGGGTTCGGTTCAGTTTACAAAGGATTTCTACCAGACGGCACTCGCTTGGCCGTGAAGAAACTAGAGGGAATTGGGCAAGGAAAAAAGGAATTTAGAGCTGAAGTGGGCATTATTGGTAGCATCCATCACATCCATTTAGTCAGATTAAAGGGATTTTGTGCAGAAGGAACTCACCGTCTTCTTGCTTACGAGTTCATGGCTAATGGGTCATTAGACAAATGGATTTTCAAGAAAAACAGAGCAGATTTGTCGCTAGACTGGGATACGAGATTCAACATAGCAGTAGGAACCGCAAAGGGATTAGCATATCTTCACGAAGACTGTGATGCTAAAATCGTCCACTGCGACATAAAGCCCGAAAACGTACTATTAGACGACAATTTCCAAGCCAAAGTCTCGGATTTCGGGCTAGCAAAGCTAATGAACCGAGAACAGAGCCATGTGTTCACCACACTCAGAGGAACCAGAGGTTATCTCGCTCCGGAATGGATCACAAACTACGCCATTTCCGAGAAAAGTGACGTGTACAGCTACGGAATGGTTCTACTAGAAATTATTGGTGGAAGAAAGAACTACGATCCGACAGAAAGCTCAGAGAAATCCCATTTCCCAACTTACGCTTTCAAGATGATGGAAGAAGGAAGAATGAAGGCCATTCTTGATGCTAAGTTGAACATAAAGGAAAACGACGAGAGGATCTTCATAGCCATTAAGGTGGCGCTGTGGTGCGTGCAGGAGGATATGCATCAAAGGCCGCCCATGGCTAAAGTGGTGCAAATGCTAGAAGGGGTCTGCCCTGTGCCAATGCCGCCAATTTGCTCGCCGTTGGGTTCTCGACTGGTTGCTGCAGGGTTCTTGAAATCTAGCAGTGAGGAATGGACTTCATCAGGGCCATCCGATTGCAATAGCGATGCGTATCTTTCATCGGTGCAGCTATCTGGGCCAAGATAG 2463 43.56 MGTSGFRGYLLLIIWVSLLLRFRPCAAGFQSVGQISPGLQGTQMNWVDHDGVFLRSNNSEFGFGFTNQQDVTQYYLAIIHLSSRSIVWTANQASPVTTSDKFLFDENGNVVLYHESNVVWSTNTANKGVSALALRDSGNLVLFGSDNAVIWESFGHPTDTLLSNQGFVEGMRLVSKPDSNNLTYFLELKSGDMVLYSGFKTPQPYWSMSRENRKTINKDGGSVISATLTANSWNFHGENDVLLWQFAFSTNTDSNATWTAVLGNDGFISFYKLQDGGSGDASSIRIPEDPCGTPEPCGTNFICYSEKKCLCPSILGSRPNCQTGITSPCDQSAGPVELVESQDKIGYFALQFMQPSSKTDLENCKSSCRSNCSCIALFFQASTGGCFLFDEIGGFLNSKNSEVVSYVKLLKNGENGENNGANGNGGKNSIPAILGIAFSTVIVICVLIYVGFRYVRKKKEPPEPAQESSEEENFLEGLSGAPIRYSYNDLQTATDNFSVKLGQGGFGSVYKGFLPDGTRLAVKKLEGIGQGKKEFRAEVGIIGSIHHIHLVRLKGFCAEGTHRLLAYEFMANGSLDKWIFKKNRADLSLDWDTRFNIAVGTAKGLAYLHEDCDAKIVHCDIKPENVLLDDNFQAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPTESSEKSHFPTYAFKMMEEGRMKAILDAKLNIKENDERIFIAIKVALWCVQEDMHQRPPMAKVVQMLEGVCPVPMPPICSPLGSRLVAAGFLKSSSEEWTSSGPSDCNSDAYLSSVQLSGPR 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25043411 25046329 + MELO3C011262.2.1 Cme03g01614 323625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01614 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 209 IPR036426 -
Cme03g01614 820 Gene3D Phosphorylase Kinase; domain 1 462 569 - -
Cme03g01614 820 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 11 820 - -
Cme03g01614 820 SMART blect_4 45 157 IPR001480 -
Cme03g01614 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Cme03g01614 820 SUPERFAMILY Protein kinase-like (PK-like) 479 766 IPR011009 -
Cme03g01614 820 Gene3D - 44 156 IPR036426 -
Cme03g01614 820 ProSitePatterns Protein kinases ATP-binding region signature. 501 524 IPR017441 GO:0005524
Cme03g01614 820 CDD B_lectin 50 157 IPR001480 -
Cme03g01614 820 MobiDBLite consensus disorder prediction 796 820 - -
Cme03g01614 820 ProSiteProfiles Bulb-type lectin domain profile. 39 155 IPR001480 -
Cme03g01614 820 SMART serkin_6 495 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01614 820 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 11 820 - -
Cme03g01614 820 ProSiteProfiles PAN/Apple domain profile. 329 410 IPR003609 -
Cme03g01614 820 Pfam Protein kinase domain 499 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01614 820 ProSiteProfiles Protein kinase domain profile. 495 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01614 820 Pfam D-mannose binding lectin 86 165 IPR001480 -
Cme03g01614 820 Gene3D Transferase(Phosphotransferase) domain 1 570 770 - -
Cme03g01614 820 PIRSF SRK 8 817 IPR024171 GO:0004674
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01614 - - - csv:101216153 1553.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01614 Cme04g00409 CCT
Cme03g01614 Cme04g00409 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01614 Cme-Chr3:25043411 Cme07g02059 Cme-Chr7:25495017 0 dispersed
Cme04g00346 Cme-Chr4:2752165 Cme03g01614 Cme-Chr3:25043411 2.50E-86 dispersed
Cme02g01250 Cme-Chr2:18049485 Cme03g01614 Cme-Chr3:25043411 3.67E-104 transposed
Cme03g01093 Cme-Chr3:20353179 Cme03g01614 Cme-Chr3:25043411 1.32E-130 transposed
Cme04g02772 Cme-Chr4:32883218 Cme03g01614 Cme-Chr3:25043411 1.18E-11 transposed
Cme06g01057 Cme-Chr6:7684990 Cme03g01614 Cme-Chr3:25043411 1.31E-08 transposed
Cme07g01378 Cme-Chr7:19334777 Cme03g01614 Cme-Chr3:25043411 2.60E-27 transposed
Cme08g02535 Cme-Chr8:32343725 Cme03g01614 Cme-Chr3:25043411 6.53E-06 transposed
Cme03g01614 Cme-Chr3:25043411 Cme04g00409 Cme-Chr4:3259627 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64756 PF00069 Pkinase 3.50E-49 CL0016 Cme PK