Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01615 ATGATTTCCACCTTCTTCAATCCTGCGCCGCCGTGCAACGTCGCCGTCGTTTCTTCTTCCTTTCTCAGATTCAAGTTCATACCAAAATTTCCCGCCACCGTACCTCTATCGTCTCTTTCGACGGTCTCCTTTCGCGCCAAAACTACCGTTAACCGTTCTCTCTGCGCCCCTGGCGATGCTTCTGTTCAGACTGATTTCTGCTTACTGAAGAAGAGAGAATTTGTGTTTTCTGCCGCGCTGCCCTTTCTTCTTATTTTGCATGAATCCGTGGAAGGTTTTAAAGCTGAGGCGGCAGAATTGGATAAAAGGGAAGTTGAACGGATAAGAGAAGAAGTAAGAAAGGTGGTAACCAAAGGAAGGGCTCCTGGTCTGCTTCGTCTGGTATTTCATGATGCTGGAACTTTTGAAACCAATGATACTTCAGGTGGTATGAACGGATCTATAATTCATGAACTTGATAGACCTGAAAACAAAGGTCTCAAGAAATCAGTTAAGATTCTTCAGGAAGCGAAGAGTACACTGGACTTAATTAGACCTGTATCTTGGGCAGACGTGATAGTTGTGGCTGGTGCTGAAGCTGTTTCAATATGTGGGGGTCCTAGTATTGCTGTTGATTTGGGTAGATTAGACTCCGAGAAACCAGATCTAGAAGGTAAACTTCCTGAGGAATCTCTGGATGCTGTTGGATTGAAGCAAATCTTCAGCAGAAAAGGATTTTCGACACGAGAACTAGTTGCACTATCTGGAGCCCATACTATTGGTGGGAAAGGTTTTGGAAGCCCTGTTGTTTTTGATAATGCATATTTCAAAATACTTTTGGAGAAGCCATGGTCATCTAACGGTGGTATGTCCAGTATGATAGGGCTACCTTCTGATCGTGCTCTTGCTGACGATGATGAATGCTTGAGATGGATCAAAGAGTATGCCAAGGATCAGAATGTGTTCTTCGAAGATTTCCAGAATGCTTATATCAAGCTAGTAAATTCTGGTGCAAAGTGGAGAAGCTAG 1008 43.75 MISTFFNPAPPCNVAVVSSSFLRFKFIPKFPATVPLSSLSTVSFRAKTTVNRSLCAPGDASVQTDFCLLKKREFVFSAALPFLLILHESVEGFKAEAAELDKREVERIREEVRKVVTKGRAPGLLRLVFHDAGTFETNDTSGGMNGSIIHELDRPENKGLKKSVKILQEAKSTLDLIRPVSWADVIVVAGAEAVSICGGPSIAVDLGRLDSEKPDLEGKLPEESLDAVGLKQIFSRKGFSTRELVALSGAHTIGGKGFGSPVVFDNAYFKILLEKPWSSNGGMSSMIGLPSDRALADDDECLRWIKEYAKDQNVFFEDFQNAYIKLVNSGAKWRS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25046897 25051295 + MELO3C011261.2.1 Cme03g01615 323626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01615 335 ProSitePatterns Peroxidases proximal heme-ligand signature. 243 253 IPR019793 -
Cme03g01615 335 Pfam Peroxidase 109 311 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme03g01615 335 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 25 333 IPR044831 GO:0004601|GO:0034599
Cme03g01615 335 Gene3D - 109 330 - -
Cme03g01615 335 PANTHER L-ASCORBATE PEROXIDASE 6-RELATED 25 333 - -
Cme03g01615 335 Coils Coil 95 115 - -
Cme03g01615 335 Gene3D Peroxidase, domain 2 221 323 - -
Cme03g01615 335 PRINTS Plant ascorbate peroxidase signature 139 149 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme03g01615 335 PRINTS Plant ascorbate peroxidase signature 198 210 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme03g01615 335 PRINTS Plant ascorbate peroxidase signature 179 197 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme03g01615 335 PRINTS Plant ascorbate peroxidase signature 307 331 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme03g01615 335 PRINTS Plant ascorbate peroxidase signature 101 121 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme03g01615 335 PRINTS Plant ascorbate peroxidase signature 237 258 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme03g01615 335 PRINTS Plant ascorbate peroxidase signature 219 236 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme03g01615 335 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme03g01615 335 PRINTS Haem peroxidase superfamily signature 121 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme03g01615 335 PRINTS Haem peroxidase superfamily signature 198 210 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme03g01615 335 PRINTS Haem peroxidase superfamily signature 180 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme03g01615 335 ProSitePatterns Peroxidases active site signature. 121 132 IPR019794 GO:0004601
Cme03g01615 335 SUPERFAMILY Heme-dependent peroxidases 112 332 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme03g01615 335 ProSiteProfiles Plant heme peroxidase family profile. 121 335 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01615 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101216396 617.461
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01615 Cme-Chr3:25046897 Cme11g01752 Cme-Chr11:25668775 3.00E-36 dispersed
Cme04g00270 Cme-Chr4:2149265 Cme03g01615 Cme-Chr3:25046897 1.86E-17 dispersed
Cme03g01615 Cme-Chr3:25046897 Cme09g00334 Cme-Chr9:2836544 2.49E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g484 . . . . . . . . . Cmo12g00288 . . . Car12g00320 . Cpe07g00297 . Bhi04g00949 Tan02g2724 . . Hepe10g0250 . . . . . . . . . . . Cone17ag1019 . . . . Cme03g01615 Blo17g00021 . . Bda13g01263 Bpe14g00580 . . Bma02g00025 . . . . Cma12g00339 . . . . . . . . . . . Cla08g01335 Cam08g1797 Cec08g1376 Cco08g1504 Clacu08g1491 . Cre08g1278 Lsi08g01206 . Chy03g01119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007203 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 37