Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01616 ATGGCTAAGATCTTTGGTTTTACTCTCAAAGAAAGTGAGGATTTTTTTCCAGCACCAATCTATCCGAACCCCAAGGATACAAGTCTCTTTTTATCCCTTGGTCCCCATGTGGATGTTTATTATCCTCTCCGTAAGAGGTCCAGAGTCAGTGCTCCATATGTGCCCAGTGGAGAAATACTCAAAAAGAAGGAGGCATCTATTGAAGTTCTTCCAGATGAGTGCCTCTTTGAGATCTTCAAACGCTTACCTGATAGAGAGACAAGGAGCCTCTGTGCTTGCGTTTCTAAACGCTGGCTCATGCTTTTAAGCAGCATTAGTGGAAACGAATTTTACAGTGCTTCTGAAAACTTGAAGCCTAAAATTGTTGTGACTGAAAATCTAGAAGATAACCAAATTACGAACGAGGGATGTCTTTCACGAAACTTGGAAGGGAAGAAGGCAACAGATGTAAGACTAGCAGCCATAGCAGTAGGAACTGCTAGTTGTGGTGGCTTGGGCAAGCTGTCAATTCGCGGAGGCAATCATGGCACTGAGGTTACAAACCTTGGCCTCAAGGCTGTTGCCCATGGATGTCCTGCCCTTAAAGCTATTTCTTTGTGGAATCTGTCTTCAATCGGAGATGAAGGTATGATTGAGATTGCCAAGGGATGTCAACTTCTAGAGAAGCTTGATTTAAGTCAATGCCCTGGAATTTCAAACAAAGCTTTGCTGGAACTTGCCAAACACTGTCCTAATCTGACTGATATAACAATTGAGGCTTGTGCAAACATTGGCAATGAAAGCATTCAAGCTATTGGGCAATATTGTTCGAATCTGAAGTCTATTTCAATCAGAGACTGCCCCCTTATTGGGGATCAAGGAATATCCAGCTTGTTCTCTTCCACCTCTTACACCTTAAACAAGGCAAAGCTCCAGGGTCTAAATGTCACTGATGTGTCACTTGCTGTCATCGGACATTACGGAAGAGCAATCACAGACCTTACGCTTACTGGCCTGACAAATGTTTCTGAGAGGGGATTTTGGGCCATGGGTAATGGTCATGGTTTGCAGAAGTTGAGATCATTTACACTTAGTTCCTGCCATGGTGTGACTGACGTTGGGCTACAATCGATTGGGAAGGGATGCCCAAACATGAAGAAGTTCTGCTTGCGCAAATGTTCATTTTTGTCCGACAATGGAATGGTCTCTTTTGTTCAGGCTGCTACCTCCATCGAGAACTTACAACTAGAAGAGTGCCACAGGATAACCCAATTGGGTTTATTTGGAACCATCTTAAACTGTGGTGCAAAGTTAAAGGCTCTTTCTCTAGTAAACTGCTTAGGGATCAAGGATTTGAGCCTGAACTTGCCTTCTCTGTCCTCATGCAAGTCTCTCCAGTCACTATCCATCCGCAATTGCCCTGGGTTCGGTAATGCAAGCTTGACTCTTTTGAGCAAGCTGTGCCCCCAGCTTCAGCATGTGGAATTTTCTGGGCTCAATGGTATTAGAGATTCTGGGCTATTGCCATTGTTTATGAATTGTAAAGCAGGATTGGTGAATGTCAATCTAAGTGGCTGTGTGAATCTAACCGACAAAGTGATTTCCTCCTTGACCAAGCTTCATGGTTGGACTCTTGAATTGCTCAATCTTGATGGTTGTTTGAAGGTCACCGATTCAAGCTTGGTGGCAATTGCAGAGAACTGCCCATTGCTCAATGATCTAGACGTCTCCAAGTGTTGTATCACTGATTTTGGGGTTGCAGCACTTGCTCAAGCCAACCAGTTCAACCTGCAACTCCTTTCTGTGTTTGGGTGCTCTGCCTTAACTGACCAGAGCTTGCTTGCTCTTGTAAAATTAGGCGACTCCCTCTTGGGCTTGAATCTTCAGCACTGCAACTCAATCAGCACCAGAAGTATTGAGCTGCTATTGGCTCAACTTCATCGGTGTGACATCCTCTACTGA 1941 44.36 MAKIFGFTLKESEDFFPAPIYPNPKDTSLFLSLGPHVDVYYPLRKRSRVSAPYVPSGEILKKKEASIEVLPDECLFEIFKRLPDRETRSLCACVSKRWLMLLSSISGNEFYSASENLKPKIVVTENLEDNQITNEGCLSRNLEGKKATDVRLAAIAVGTASCGGLGKLSIRGGNHGTEVTNLGLKAVAHGCPALKAISLWNLSSIGDEGMIEIAKGCQLLEKLDLSQCPGISNKALLELAKHCPNLTDITIEACANIGNESIQAIGQYCSNLKSISIRDCPLIGDQGISSLFSSTSYTLNKAKLQGLNVTDVSLAVIGHYGRAITDLTLTGLTNVSERGFWAMGNGHGLQKLRSFTLSSCHGVTDVGLQSIGKGCPNMKKFCLRKCSFLSDNGMVSFVQAATSIENLQLEECHRITQLGLFGTILNCGAKLKALSLVNCLGIKDLSLNLPSLSSCKSLQSLSIRNCPGFGNASLTLLSKLCPQLQHVEFSGLNGIRDSGLLPLFMNCKAGLVNVNLSGCVNLTDKVISSLTKLHGWTLELLNLDGCLKVTDSSLVAIAENCPLLNDLDVSKCCITDFGVAALAQANQFNLQLLSVFGCSALTDQSLLALVKLGDSLLGLNLQHCNSISTRSIELLLAQLHRCDILY 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25052467 25056364 - MELO3C011260.2.1 Cme03g01616 323627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01616 646 Pfam Leucine Rich repeat 350 371 IPR001611 GO:0005515
Cme03g01616 646 Pfam Leucine Rich repeat 561 583 IPR001611 GO:0005515
Cme03g01616 646 Pfam Leucine Rich repeat 268 292 IPR001611 GO:0005515
Cme03g01616 646 Pfam F-box domain 70 106 IPR001810 GO:0005515
Cme03g01616 646 SMART LRR_CC_2 191 216 IPR006553 -
Cme03g01616 646 SMART LRR_CC_2 535 560 IPR006553 -
Cme03g01616 646 SMART LRR_CC_2 508 533 IPR006553 -
Cme03g01616 646 SMART LRR_CC_2 321 346 IPR006553 -
Cme03g01616 646 SMART LRR_CC_2 269 294 IPR006553 -
Cme03g01616 646 SMART LRR_CC_2 401 426 IPR006553 -
Cme03g01616 646 SMART LRR_CC_2 587 612 IPR006553 -
Cme03g01616 646 SMART LRR_CC_2 243 268 IPR006553 -
Cme03g01616 646 SMART LRR_CC_2 349 374 IPR006553 -
Cme03g01616 646 SMART LRR_CC_2 481 506 IPR006553 -
Cme03g01616 646 SMART LRR_CC_2 375 400 IPR006553 -
Cme03g01616 646 SMART LRR_CC_2 217 242 IPR006553 -
Cme03g01616 646 SMART LRR_CC_2 455 480 IPR006553 -
Cme03g01616 646 SMART LRR_CC_2 561 585 IPR006553 -
Cme03g01616 646 PANTHER UNCHARACTERIZED 16 637 - -
Cme03g01616 646 SUPERFAMILY L domain-like 304 491 - -
Cme03g01616 646 Gene3D Ribonuclease Inhibitor 450 644 IPR032675 -
Cme03g01616 646 Gene3D Ribonuclease Inhibitor 296 449 IPR032675 -
Cme03g01616 646 Gene3D Ribonuclease Inhibitor 61 295 IPR032675 -
Cme03g01616 646 SUPERFAMILY F-box domain 66 104 IPR036047 GO:0005515
Cme03g01616 646 SUPERFAMILY RNI-like 118 643 - -
Cme03g01616 646 PANTHER - 16 637 - -
Cme03g01616 646 ProSiteProfiles F-box domain profile. 64 114 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01616 K14515 EBF1_2; EIN3-binding F-box protein - csv:101216639 1222.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01616 Cme04g00407 CCT
Cme03g01616 Cme04g00407 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01198 Cme-Chr2:17252740 Cme03g01616 Cme-Chr3:25052467 0 dispersed
Cme03g01616 Cme-Chr3:25052467 Cme10g00782 Cme-Chr10:5064277 1.13E-12 dispersed
Cme01g01125 Cme-Chr1:14432852 Cme03g01616 Cme-Chr3:25052467 5.19E-06 transposed
Cme01g01217 Cme-Chr1:15372553 Cme03g01616 Cme-Chr3:25052467 1.19E-06 transposed
Cme04g02758 Cme-Chr4:32816272 Cme03g01616 Cme-Chr3:25052467 1.22E-18 transposed
Cme07g00176 Cme-Chr7:1168552 Cme03g01616 Cme-Chr3:25052467 1.32E-07 transposed
Cme11g01949 Cme-Chr11:27546075 Cme03g01616 Cme-Chr3:25052467 1.44E-26 transposed
Cme01g02567 Cme-Chr1:33555831 Cme03g01616 Cme-Chr3:25052467 1.11E-06 wgd
Cme03g01616 Cme-Chr3:25052467 Cme04g00407 Cme-Chr4:3233873 0 wgd
Cme03g01616 Cme-Chr3:25052467 Cme05g01913 Cme-Chr5:27795795 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012947 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28