Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01617 ATGGGATCAGAAGAAAGTGAAAAGATAGTGGTAACTCAAGTAAGCTTTGGCGGATTTGACAGTGATGTTAAAGCTAGAGATCTTATGAGTTATCTGGAATCCGAGATTGGGCTTGTGGACAGATGTAGATTGAAAACTTCTTGGACTCCTCCAGAATCATACCCAGATTTTGAAGTCAGCAATGTTGCTAATGTTATAAAATCTGATGATTACAAGAAGGTGGTGCCTCATGCATTTGTGCATTTTGTCTCACCTGACTCTGCTGCTGAGGCTCTACATGCTGCAGGTCGTGGCGAGCTTCTTTTTAACGGTAAATTGTTGAAGGCGAGTTTGGGGCCTGAGAGTCCTTTTCATATAAATCAGAGGCGAAGGACTAAGGTTCCCTTTAAGTTATCTGATGTGCAAGTTGATATAGGGAACTTAACTTGTCATGATGGGTTTTCAGTTGCTTGGAGAGGGCCTTCGAGTGGAATGGATTTTCTAGTGGATCCCTTTGATGGAACCTGTAAATTTTGTTTCACGAAGGATACTGCATTCTCTTTTAAAGATAACAACAAGTATACAGTTTTGAAGTGTGATTACAAATTGGAGTTCATAGTGAGGGACATTAATCAGATCAAAAGATATACGGATACATCATGTTATGTTATTCTCTTGCAGCTTACATCATCACCCTGCATTTGGTATAGAACAGCAGATGATGATATTGCTAAATCAGTTCCATATGATTTGTTGGATGATGATGATCCATGGATCCGGACAACAGATTTCACGATTAGTGGAGCTATTGGTCGTTGTAATACTTTCAGAGTTTCAGTCCCACCCCGCTATGGCATCAAGCTGAATAATGCCATGAATTATCTAAAAGAACAAAGAGTTCACCAGGTCTCCCTCAACCGGCCTCCCAAGATCCTGAATGAACCAGATTATGGTGTGCAAATGACCGATCACTTCTTTTGCATCTTTTATAAAGAAGACATATCCTTTGAGATATTATTTCTGGTAAATGCCGTAATGCACAAAGGGATAATCAACCAACACCAAATGTCTGATAGATTTTTTGATTTGCTAAGAAACCAGCCCAATGAAGTTAATTTGGCTGCTTTAAGTCATATTCATTCTTATAGACGTCCTGTGTTGGATGCCTGTAAGAAGCTAAAACTTGTACAAGAATGGTTGTTGAAGAACCCTACGCTTTGGAAAAGATCTAAAGAGCTGGTAGATATCGTTGAAATCAGGAGATTAGTAATAACTCCTTCAAAAGCATATTGCTTTCCACCTGAAGTTGAACTGTCCAATAGGGTTTTGAGAAGATACAAGGATGTTGCCGATAGGTTCCTCAGGGTTACCTTCATGGATGAAGGCATGAAGAAAATCAATTCACATGTTTATACCTATTATGTTGCCCCCATAGTAAAGGAAATTACTTCAAGCTCCTTTCCCCAGAAGACCAAAATATTTGCAAGGATGAAACATATTCTGAAACATGGATTTCACTTGTGTGGTAGGAAATACTCCTTTTTGGCGTATTCATCCAACCAACTGAGGGACCAATCAGCTTGGTTCTTTGCTGAATGCAAAAATATAAGTGTTGATGGTATTTTGGGTTGGATGGGGAAATTTACCAATAAAAATGTTGCCAAGTGTGCTGCTAGAATTGGTCAGTGCTTTTCATCTACTTATGCAACAATTGAAGTTCCAAGAAACATGGTCAATCACAATCTTCAGGATGTTGAGAGGAATGGATATGTTTTCTCTGATGGGATTGGAACCATTACTCCTGATCTTGCGCAGGAAGTTGCAGACAAACTAAAAATGGATGGGAGCCTGCCCTGCGCTTACCAAATTAGATATGCAGGTTACAAAGGTGTTGTTGCCACTTGGCCATCCAAGGAGGACGGGATCAGACTTGCTTTAAGGCCAAGCATGAATAAATTTGAATCAGATCATAGAATCTTGGAGATCTGTTCATGGACTAGATTTCAGCCAGGTTTTCTTAATAGGCAGATTATAACCCTCCTTTCTACACTAAGTGTTCCTGATGAAATTTTCTGGAGTATGCAGGAGACTATGATTTCAAAACTGGATAGAATGATCACCGATACAGATGTGGCTTTTGAAGTTCTCACTGCATCCTGTGCCGAGCAAGGAAATGCAGCGGCAATTATGTTGAGTGCTGGTTTTGAACCTCGAACCGAACCTCATCTAAGGGGCATGCTAATGTGTATAAGAGCAGCACAGCTGTGGGGCCTTCGGGAAAAAGCTAGGATTTTTGTTACTGAGGGGAGGTGGTGTATGGGGTGTTTCGACGAGAGCGGCGTGTTACAAGAAGGCCAATGCTTCATCCAAGTATCCACTCCATTGCTTGAGAAGTGTTTCTCCAAGCATGGGTCTCTCTTTGCTGAGACAAAGAACAATCTTACTGTGGTAAGAGGGACTGTAGTCATAGCGAAAAATCCGTGCCTTCATCCAGGAGATGTGAGAATTCTCGAAGCAGTTGATGCTCCCGAGTTGCATCATTTGTACGATTGCCTCGTGTTTCCTCAAAATGGTGAACGACCCCATACCAATGAAGCTTCTGGAAGTGATTTGGATGGCGATCTCTACTTCACTACTTGGGATGAAAATCTTATTCCACCTAGTAAAAAAAGTTGGCCACCTATGGAGTATGCTCCAGCGGATGTAAAGACTCTTCAACGTAAAATTACTCGATTGGATATAATGGAGTTCTTTGCGAAAAATATGATCAATGAGAGTCTGGGGACAATATGCAATGCGCATGTTGTTCATGCTGACCGCAGCAAGTATGGAGCTTTGGATGAGAACTGTATTCAATTATCTGAATTAGCTGCCACAGCTGTTGATTTCCCCAAGACAGGGAAGATCGTGACCATGCCTCCCCATTTAAAACCAAAACTATATCCAGATTTTATGGGAAAGGAAGCTACTCAATCATACAAGTCCACCAAAATTCTAGGAAAAATGTACCGCCGAATTAGAGATGCGTATGATGATGATGATATGATCACATCACGTGAGCTAAATTTTACTCCTGGCGATGTCCATTATGATGTAGACCTCGAAGTGGCAGGAGCAGAAGATTTCATTGCAGAAGCATGGAATCAAAAATGCTCATACGATGGTCAGCTGAGCGGTTTACTGGGACAATATAAAGTTAATAGGGAAGAAGAAATTGTCACTGGACATATTTGGTCCATGCCAAAGTACGTTAGTAGGAAGCAAGGAGAGCTGAAGGAGAAGCTTAAGCATTCTTATAGCACTCTTAAGAAAGATTTCAGGCAAGTTTTTGAGAATATTGGGCCAGAGTTTGAGCAACTCACTTGTGATGAAAGGAATGCATTTTATGAAAAAAAGGCATCTGCCTGGTATCAGGTGGCATACCATCCGACTTGGTTGAAGAAATCATTGGAGCTGCGAGAACCCGACGCGCCTGAGGCCATCCCGATGTTAAGCTTTCCTTGGATTGCTGCCGATTATCTTGCACGAATCAAAATCAAATGCAGGCGGATGAAAAGTTTTGACCCAACAAAGCCGATTAACTCTTTGAAAAGGGAGGGAAATAGAGTTGGAGTAGCAATGGCGGCAAAAGCTATGCGAGGAAGAAGAAAAACCCCAGAACAGAGGCAAATGCCGCGCTTGCTTCATGGGACGCTTCATGCCGATATATATGGAATCGACAAGCTTCAAACTGGATTTCCTATTTTCTGCGGGAAGTCTCTAACTGAGGTGAATTTTGCATTGCAGGACAAAAGGTCGACCAAAAAGTTTCTTGCTGGAGTGAAGAGATGCATCCTTTGTCGTCCCGAGATTGTTGGATCTCGAATGTATGCAACAGTCGATCTTGATAAGGCCAGAGTTGGTCGGACGAGAATAGTGGATCAGCCATACAGTCCTCAATGGAACGATCATTTTCGTATATATTGTGCTCATACAGTGTCACATATTATATTCACAGTTAAAGATGGAGATTTCATTGGTGCAACATTAATTGGAAGAGCTTATGTGCCTGTTGAGGAAATCATCAAGGGATTTGTATTTGAGAAATGGGTTGACATATTAGATGAAGACGGTAAACCTTTATATGGTCGTTCTAGAATCCATGTAAAGTTGCAATTTTCAAGTGTTAATGAAGACAGGAACTGGTCCCGAGGAATCTTGGATCCGAATTTTGAATGTGTACCTTTCACATTCTTCAAACAAAGATGGGGTTGTAAAGTTTCTCTTTACCAGGATGCTCATGTTTTAAACAACTTCCTTCCTCGAGTTGGTTTGTCAGGAGGGAATTTTCATGAAGTACACAGGTGTTGGGAGGACATTTTTGATGCAATTAGCAACGCGAGACACTTGATTTACATAACTGGTTGGTCTGTGTATACAGAAATAACTTTGATCAGAGACAGAGAAAGAAGACAAACAGGAGATGATATTACTCTGGGGCAACTGCTAAAGAAGAAGGCAGAAGAAGGTGTGACCGTTTTGCTTCTTGTTTGGGATGACAGGACTTCCATTGAAGTGTTCAAAAGAGATGGTTTGATGGCAACTCACGATCAAGAAACTGCAGAATACTTCAGGAACTCGAAGGTACGTTGCGTTCTATGTCCACGGAGTCCTGATGTAGGCAGAAGTACGATTCAGGGGTTTGAGACTGATACCATGTTTACTCACCACCAAAAAACAGTTGTGCTTGATAGTGAAATAGTTGGTGGAGGAACAGAAAAAAGAAGGATCATAAGTTTCGTTGGTGGCATTGATCTGTGTGATGGGAGATACGATACATCGCAGCACCCTTTGTTTTCAACTCTAGATTCAATCCACTATAACGATTTTCACCAGCCTAACTTTTCAGGCTCTTCAATTAGGAAAGGTGGTCCTCGAGAACCATGGCATGACATCCATTGCCGCCTAGAAGGGCCTGTTGCTTGGGATATTTTGTACAATTTTGAGCAAAGATGGAAAAAGCAAGTTGGAAATAACTCGTTGATTCCAATGCAAAAGTTTGAAGAAATCATTACCCGCCCAGTAATGGTTTTACCAGCAGACGACCCTGACACGTGGAGTGTTCAAATATTTCGGTCTATTGATGGTGGTGCTGTACATGGTTTTCCAAATACACCCGAAGGTGCAGCCGAAGTCAACCTTGTAACTGGAAAGAATAATGTTATAGATAGGAGTATTCAAGATGCTTATATTAATGCTATTCGCCGAGCAAAAAAATTCATATACATTGAGAATCAATATTTCCTTGGAAGTTCTTATGGTTGGAAAGCAGCTGGTATAAGGGTAGAAGAAATCAATGCTTTGCATACTATTCCTAAGGAGATATCACTGAAGATTGTGAGCAAGATTGAAGCTGGAGAGAGATTTACAGCATATGTTGTGATTCCAATGTGGCCAGAAGGTATTCCCGAGAGTGCTTCAGTTCAAGCTATATTAGATTGGCAAAGGAGAACATTAGACATGATGTACACAGATATATCTCAAGCCCTTCGGAAGAAGGGCCTTGATGCAAATCCTAGAGATTACCTGACATTCTTCTGCCTTGGCAATCGAGAGAAGAAGAGAACTGGAGAATATATACCACCAGAGAAACCAGAGCCCAATTCGGATTATGCTCGGGCTCAAGAGCACCGACGTTTCATGATCTATGTTCACTCCAAAATGATGATAGTTGACGATGAGTACATAATTATTGGATCTGCCAACATCAACCAAAGATCAATGGATGGAGGAAGAGACTCTGAGATTGCAATGGGGGCTTTTCAACCTCGTCACTTGGCATCCAGTGAGCCAGCGAGAGGTCAAATCTACGGCTTCAGAGTGGCTCTATGGTACGAGCATCTTGGTCTGTTTGACAAAGTCTTCCATAACCCAGAGAGTGAAGACTGCATCCAATTCGTAAACAAGCTCGCTCAAGAGAACTGGCAATTTTACTCGGACGATACGTACGATGGCGATCTTCCTGGCCATTTGCTTTCCTATCCCATCCAAGTAGGACCCAACGGATCGGTTTCGGCACTGCCAAAATTTGAATTTTTCCCTGACACGAAGGCTCGTGTTCTTGGCCAACTATCCGAGTTGAGAGTTAGTGAACAGGGAACTTCTCCTGGCTTTTTACCCATCATTCCTTTCTTCAAGTTCTTGGAGATTGTTTACGCAGGGGAAACTATGTATTCTAGGTGTTGTCTCCTCAACCGCTTAGAAGGTTGCTCTAGCAAGAATCCATGTTGTTCTTTCTTACAGTTTTCTGGAGAATATATGCGCGCTCTTATTCTTTTGATGGTGGATAAAATCAAGCTTCTTTTCCATAAAAGAAGGCGTGAGGGATGCTGCTCTGCATCTGCACTAGGTAATGCAATGGATGGGCCGTCTAAAGGTCTGAGAGTTAAAGACAAAGAAGCAAAGAAACAATGCTTACCAGAAAATTTCCCTAGCTCTAGCACATGTGAAATGGACAACAGTACAGTTTGGTCCCAGAGAAGCATGGCATCAGCCCAATCACATGATTCTCAAAGCAATATTGGGAGCAGTACAGACTTTGTAAATTCTGGACTACTTCTTTGGAATGAGACCAGGAAGCAATGGGTTGGAAATAAAATGTCCAAGAGCCAAAAGCAAGTTCAGGAACCTAAAATAAGCTGGAATGCTACTTACGACAGCTTACTAACAACGAACAAGCCGTTCCCTGAGGCCATACCTCTTACT 6723 41.74 MGSEESEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVSNVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHINQRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKDNNKYTVLKCDYKLEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSVPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPKILNEPDYGVQMTDHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEVNLAALSHIHSYRRPVLDACKKLKLVQEWLLKNPTLWKRSKELVDIVEIRRLVITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKNISVDGILGWMGKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHNLQDVERNGYVFSDGIGTITPDLAQEVADKLKMDGSLPCAYQIRYAGYKGVVATWPSKEDGIRLALRPSMNKFESDHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHHLYDCLVFPQNGERPHTNEASGSDLDGDLYFTTWDENLIPPSKKSWPPMEYAPADVKTLQRKITRLDIMEFFAKNMINESLGTICNAHVVHADRSKYGALDENCIQLSELAATAVDFPKTGKIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWNQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENIGPEFEQLTCDERNAFYEKKASAWYQVAYHPTWLKKSLELREPDAPEAIPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLKREGNRVGVAMAAKAMRGRRKTPEQRQMPRLLHGTLHADIYGIDKLQTGFPIFCGKSLTEVNFALQDKRSTKKFLAGVKRCILCRPEIVGSRMYATVDLDKARVGRTRIVDQPYSPQWNDHFRIYCAHTVSHIIFTVKDGDFIGATLIGRAYVPVEEIIKGFVFEKWVDILDEDGKPLYGRSRIHVKLQFSSVNEDRNWSRGILDPNFECVPFTFFKQRWGCKVSLYQDAHVLNNFLPRVGLSGGNFHEVHRCWEDIFDAISNARHLIYITGWSVYTEITLIRDRERRQTGDDITLGQLLKKKAEEGVTVLLLVWDDRTSIEVFKRDGLMATHDQETAEYFRNSKVRCVLCPRSPDVGRSTIQGFETDTMFTHHQKTVVLDSEIVGGGTEKRRIISFVGGIDLCDGRYDTSQHPLFSTLDSIHYNDFHQPNFSGSSIRKGGPREPWHDIHCRLEGPVAWDILYNFEQRWKKQVGNNSLIPMQKFEEIITRPVMVLPADDPDTWSVQIFRSIDGGAVHGFPNTPEGAAEVNLVTGKNNVIDRSIQDAYINAIRRAKKFIYIENQYFLGSSYGWKAAGIRVEEINALHTIPKEISLKIVSKIEAGERFTAYVVIPMWPEGIPESASVQAILDWQRRTLDMMYTDISQALRKKGLDANPRDYLTFFCLGNREKKRTGEYIPPEKPEPNSDYARAQEHRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPRHLASSEPARGQIYGFRVALWYEHLGLFDKVFHNPESEDCIQFVNKLAQENWQFYSDDTYDGDLPGHLLSYPIQVGPNGSVSALPKFEFFPDTKARVLGQLSELRVSEQGTSPGFLPIIPFFKFLEIVYAGETMYSRCCLLNRLEGCSSKNPCCSFLQFSGEYMRALILLMVDKIKLLFHKRRREGCCSASALGNAMDGPSKGLRVKDKEAKKQCLPENFPSSSTCEMDNSTVWSQRSMASAQSHDSQSNIGSSTDFVNSGLLLWNETRKQWVGNKMSKSQKQVQEPKISWNATYDSLLTTNKPFPEAIPLT 2241
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 25062581 25077368 - MELO3C011257.2.1 Cme03g01617 323628
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01617 2241 Pfam Phospholipase D C terminal 1958 2029 IPR024632 -
Cme03g01617 2241 ProSiteProfiles C2 domain profile. 1205 1357 IPR000008 -
Cme03g01617 2241 Pfam Protein of unknown function (DUF4050) 2153 2216 IPR025124 -
Cme03g01617 2241 PANTHER RNA-DEPENDENT RNA POLYMERASE 7 1193 IPR007855 GO:0003968
Cme03g01617 2241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 114 IPR000504 GO:0003723
Cme03g01617 2241 SMART C2_3c 1224 1356 IPR000008 -
Cme03g01617 2241 Pfam Phospholipase D Active site motif 1887 1913 IPR001736 GO:0003824
Cme03g01617 2241 Pfam Phospholipase D Active site motif 1558 1596 IPR001736 GO:0003824
Cme03g01617 2241 Pfam RNA dependent RNA polymerase 417 999 IPR007855 GO:0003968
Cme03g01617 2241 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 7 1193 - -
Cme03g01617 2241 Gene3D C2 domain 1273 1392 IPR035892 -
Cme03g01617 2241 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1280 1382 IPR035892 -
Cme03g01617 2241 CDD C2_plant_PLD 1217 1379 - -
Cme03g01617 2241 CDD RRM_SF 14 110 - -
Cme03g01617 2241 SUPERFAMILY Phospholipase D/nuclease 1384 1669 - -
Cme03g01617 2241 Pfam C2 domain 1280 1358 IPR000008 -
Cme03g01617 2241 SMART pld_4 1558 1596 IPR001736 GO:0003824
Cme03g01617 2241 SMART pld_4 1886 1913 IPR001736 GO:0003824
Cme03g01617 2241 Gene3D Endonuclease Chain A 1434 1681 - -
Cme03g01617 2241 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1886 1913 IPR001736 GO:0003824
Cme03g01617 2241 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1558 1596 IPR001736 GO:0003824
Cme03g01617 2241 Gene3D Endonuclease Chain A 1703 1930 - -
Cme03g01617 2241 SUPERFAMILY Phospholipase D/nuclease 1719 1969 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02610 Cme-Chr1:33760704 Cme03g01617 Cme-Chr3:25062581 0 dispersed
Cme02g01199 Cme-Chr2:17270241 Cme03g01617 Cme-Chr3:25062581 6.05E-34 dispersed
Cme03g01617 Cme-Chr3:25062581 Cme07g02065 Cme-Chr7:25517572 0 dispersed
Cme06g00205 Cme-Chr6:1256301 Cme03g01617 Cme-Chr3:25062581 1.53E-07 dispersed
Cme07g02062 Cme-Chr7:25505999 Cme03g01617 Cme-Chr3:25062581 4.80E-18 dispersed
Cme10g01304 Cme-Chr10:14177391 Cme03g01617 Cme-Chr3:25062581 1.84E-28 dispersed
Cme10g01431 Cme-Chr10:17267835 Cme03g01617 Cme-Chr3:25062581 4.00E-11 dispersed
Cme02g00177 Cme-Chr2:1367327 Cme03g01617 Cme-Chr3:25062581 5.11E-18 transposed
Cme02g01954 Cme-Chr2:25821307 Cme03g01617 Cme-Chr3:25062581 3.75E-167 transposed
Cme03g01540 Cme-Chr3:24525324 Cme03g01617 Cme-Chr3:25062581 0 transposed
Cme04g01195 Cme-Chr4:16327414 Cme03g01617 Cme-Chr3:25062581 0 transposed
Cme05g01583 Cme-Chr5:25048067 Cme03g01617 Cme-Chr3:25062581 8.87E-19 transposed
Cme06g02664 Cme-Chr6:33733869 Cme03g01617 Cme-Chr3:25062581 0 transposed
Cme08g00969 Cme-Chr8:6372261 Cme03g01617 Cme-Chr3:25062581 0 transposed
Cme09g01359 Cme-Chr9:18784964 Cme03g01617 Cme-Chr3:25062581 2.77E-177 transposed
Cme11g02535 Cme-Chr11:31792866 Cme03g01617 Cme-Chr3:25062581 0 transposed
Cme11g02046 Cme-Chr11:28223054 Cme03g01617 Cme-Chr3:25062581 2.87E-18 transposed
Cme03g01617 Cme-Chr3:25062581 Cme05g01915 Cme-Chr5:27841786 5.89E-14 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01617 K11699 - csv:101217108 2378.98