Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01618 ATGGGAGAAACAAGAGACAACGAATATGAGGAAGAGCTCCTCGACTACGAGGAAGAAGAAGAGAAGGCCCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTCGGAATTCATAGTTCGGGATTCAGAGACTTTCTATTGAAGCCAGAGCTTCTCCGTGCGATTGTAGACTCTGGATTTGAGCATCCATCTGAAGTACAACATGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTCTTTGTTCTGTCAACGCTGCAGCAGATTGACCCTGTGGCTGGTCAAGTATCTGCCCTAGTTCTGTGCCATACCAGGGAGCTTGCATACCAGATCTGTCATGAGTTCGAAAGGTTCAGCACTTATCTTCCGGATCTGAAGGTTGCTGTCTTCTATGGTGGAGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCCGGAAGGATATTGGCACTGTCGAGAGATAAAGACCTATCCCTGAAGAATGTCCGACATTTTATCTTGGACGAGTGTGACAAGATGCTTGAGTCACTTGATATGCGGAGGGATGTACAAGAGATCTTCAAGATGACTCCTCACGACAAACAAGTTATGATGTTTTCTGCAACACTTAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGATGATGAGGCAAAGCTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTTCTTGATGCATTGGACTTCAATCAAGTGGTTATTTTTGTCAAAAGTGTTAATAGGGCAGCTGAGCTAGATAAGTTATTGGTGGAGTGTAACTTCCCCTCTATATGCATCCACTCTGGCATGTCGCAGGAAGAGAGGTTGACTCGATACAAAGGTTTTAAGGAAGGACATAAGCGCATTCTTGTGGCTACAGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTAAACATTGTTATCAATTATGATATGCCAGATTCAGCTGATACATATCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGTACCAAAGGGCTTGCAATTACTTTTGTGTCATCTGCAGCTGATTCTGATGTTCTCAACAATGTTCAAGAAAGGTTTGAAGTCGATATTAAGGAGCTTCCAGAGCAGATTGATACCTCCACTTACATGCCATCATAG 1284 42.91 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYMPS 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25079953 25085206 + MELO3C011256.2.1 Cme03g01618 323629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01618 427 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Cme03g01618 427 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Cme03g01618 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Cme03g01618 427 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Cme03g01618 427 Gene3D - 259 426 IPR027417 -
Cme03g01618 427 SMART ultradead3 65 266 IPR014001 -
Cme03g01618 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Cme03g01618 427 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 422 - -
Cme03g01618 427 MobiDBLite consensus disorder prediction 1 22 - -
Cme03g01618 427 Gene3D - 42 258 IPR027417 -
Cme03g01618 427 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 422 - -
Cme03g01618 427 CDD DEADc_DDX39 45 252 - -
Cme03g01618 427 CDD SF2_C_DEAD 263 392 - -
Cme03g01618 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 423 IPR001650 -
Cme03g01618 427 MobiDBLite consensus disorder prediction 1 29 - -
Cme03g01618 427 SMART helicmild6 302 383 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01618 Cme-Chr3:25079953 Cme06g00191 Cme-Chr6:1170357 6.03E-82 dispersed
Cme03g01618 Cme-Chr3:25079953 Cme04g01226 Cme-Chr4:17004019 1.39E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01618 K12812 - csv:101217346 837.41