Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01622 ATGGCTCTCTTCTTCTTCTTCTTCTTCTTAATGATCTTCAAACATGTTTCCATGGCTCTTGCAGACATTGGCACTGCCACACCCTATGGCCCCCCATATCTTCCCACACAGTGTAACGGGAATAGCATCGAACAGTTCCCGCCCGGCAACCTCTTTGTCGCAGTCAACGAAGGGTTGTGGGATAATGGTGCTGCCTGCGGTCGAAGATATAGATTACGATGTTTGAGTGGTCGAAATCGCCCATGCAAGACTGACATCATCGAAGTTCAAGTCGTGAACTTTTGCCCGAAGTCGCCATGCCCTTCTTCCTTTCTCATGTCCAAAGAGGCTTTCTCCGCAATCTCTCGCTTCCCTAATGCTAAACTCAACGTTGAATACATTGAGTACGATATAATATCACAAGTTTTGCAGCCATCAATTTCCAAAGTTGAGTACAGTCTCAAATTTTGA 450 45.78 MALFFFFFFLMIFKHVSMALADIGTATPYGPPYLPTQCNGNSIEQFPPGNLFVAVNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAISRFPNAKLNVEYIEYDIISQVLQPSISKVEYSLKF 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25103351 25104414 - MELO3C011252.2.1 Cme03g01622 323633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01622 149 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 7 128 - -
Cme03g01622 149 PANTHER RLPA-LIKE PROTEIN, DOUBLE-PSI BETA-BARREL-RELATED 7 128 - -
Cme03g01622 149 SUPERFAMILY Barwin-like endoglucanases 8 131 IPR036908 -
Cme03g01622 149 Gene3D - 22 130 IPR036908 -
Cme03g01622 149 SMART dpbb_1 53 126 IPR007112 -
Cme03g01622 149 Pfam Lytic transglycolase 54 126 IPR009009 -
Cme03g01622 149 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 24 145 IPR007112 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01622 - - - csv:101208867 254.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01622 Cme-Chr3:25103351 Cme05g01945 Cme-Chr5:28042871 7.41E-23 dispersed
Cme03g01622 Cme-Chr3:25103351 Cme03g01651 Cme-Chr3:25298039 2.47E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g462 Blo01g01381 . Bda01g00739 Bda03g00066 . . . . Cmo05g00387 . . Cma05g00388 . . Sed01g1369 . . Bhi04g00975 Tan02g2713 Cmetu03g1797 . Hepe10g0261 . Lcy13g1780 . . . . . . . . . . . . . . Cme03g01622 . . . . . . . . . . . . . . Car05g00329 Cpe11g00332 . . . . . . . . Cla08g01325 Cam08g1787 Cec08g1365 Cco08g1493 Clacu08g1481 . Cre08g1270 . . Chy03g01129 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007057 2 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 0 2 1 1 1 1 2 1 1 1 1 2 3 36