Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01633 ATGGCAGAAATTAGCGAGGTAGATGATCAAAAGCTTTGTGGTAATGTTGTGATATGTATTGGAAAAATGTTAAAACAACTACCTCAAGTTAATGCAGAATGTAGCATCTATCAAGTTTCCAAAGAGCTACTCGAGATTAATCGTAAAGCCTATATCCCTCAACTCATTTCCATTGGCCCCATTCATCATGGTACTAACAATGATTTGGTAGCCAATCAACAATATAAGCTTCAAGGGTTTATTAACTTTCTACGTCGTATAAATATTAATAACAAGCAGATTCTATCAATGGAGGACATCTTACAAACGGGAACATTGAACACCCTTGTAGAAAAAGCTCATCATTGGGTGGAAGAAGCACGCAATTGCTATACATCACCACCCATTAACACGATAGATATGGATGCATTTGTTATAATGATGCTTGTGGATGCTTGTTTCATAGTCGAGTTTCTTATACTCAAATTTGATTACGACCATCCAAATGGTAAGTTCTTACAAATTCAGGACAATATAGATATTTCATTCTACCAAGGAATGGACTTGCATATACTTTATGACTTGATAAAGTTGGAAAATCAAGTTCCTTTCTTCCTTCTACAATATTTGTTTGACCTGATACCAAAACATGATATCTCCATGATGATTTCCTCCTTTAGAGATCTTACACTTAGGGCTCTTAAGTTTCGGTTGGTACGTACATACGAGATTAATTTGTTCAAAGAGCCAAAACACTTTGTTGATTTATTAACTTTCTACTTCGTTCCTTCGGCCGGCCAGAAGGTTAACAATCAACATGGAATATTCAAAAGTACTATTGAGGAAAAAAATAGGTGGATTCCCCCATCTATAACTGAGCTTCGTGAGGCTGGTGTGACCATCAAGAAAGCCGAAAAAGCCAAACATTTGACAGATATAACCTTCAAAAATGGGGTTTTGAGAATCCCACCTTTACATATTTATGATGAATTTGAACTTGTGTTGCGAAACATGGTCGCATTTGAGCAAATCTCTGCAAGAAAAATGAACAAGTATGTAATCCAATATGTATTATTTATGGATGATTTGATAAGTACAGAGAAAGATGTACGTTTACTTGTGGAGGCTGGAGTCATAATCAACCAAATTGGTGGCAGTGATAAAGAAGTTGCTGATCTATTTAACAACTTTTGTAAATTTATCACAGCTCCCAAATCTTCCAACTTTGACTCTATCATCAAAGATTTGTGTGAACATTGCAATGGAAGGTGGAACAGGGCCAAAGCTTCACTAAAACATAACTATTTCAATACGCCATGGGCATTTATCTCCTTCTTTGCTGCAACCTTGCTCATTCTTCTCACCCTTCTTCAAACCATTTTCACCGCTATCACCACATTTACTTAG 1386 36.22 MAEISEVDDQKLCGNVVICIGKMLKQLPQVNAECSIYQVSKELLEINRKAYIPQLISIGPIHHGTNNDLVANQQYKLQGFINFLRRININNKQILSMEDILQTGTLNTLVEKAHHWVEEARNCYTSPPINTIDMDAFVIMMLVDACFIVEFLILKFDYDHPNGKFLQIQDNIDISFYQGMDLHILYDLIKLENQVPFFLLQYLFDLIPKHDISMMISSFRDLTLRALKFRLVRTYEINLFKEPKHFVDLLTFYFVPSAGQKVNNQHGIFKSTIEEKNRWIPPSITELREAGVTIKKAEKAKHLTDITFKNGVLRIPPLHIYDEFELVLRNMVAFEQISARKMNKYVIQYVLFMDDLISTEKDVRLLVEAGVIINQIGGSDKEVADLFNNFCKFITAPKSSNFDSIIKDLCEHCNGRWNRAKASLKHNYFNTPWAFISFFAATLLILLTLLQTIFTAITTFT 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25164671 25166856 + MELO3C011245.2.1 Cme03g01633 323644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01633 461 PANTHER BNAC04G53230D PROTEIN 25 455 - -
Cme03g01633 461 Pfam Plant protein of unknown function 36 447 IPR004158 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01633 - - - cmo:103488564 427.557
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01633 Cme-Chr3:25164671 Cme03g01636 Cme-Chr3:25193286 1.55E-170 dispersed
Cme03g01637 Cme-Chr3:25196267 Cme03g01633 Cme-Chr3:25164671 1.08E-21 dispersed
Cme03g01639 Cme-Chr3:25208359 Cme03g01633 Cme-Chr3:25164671 2.00E-39 dispersed
Cme03g01632 Cme-Chr3:25150990 Cme03g01633 Cme-Chr3:25164671 2.07E-16 tandem
Cme03g01633 Cme-Chr3:25164671 Cme03g01634 Cme-Chr3:25165276 4.27E-75 tandem
Cme01g01856 Cme-Chr1:26465061 Cme03g01633 Cme-Chr3:25164671 2.58E-58 transposed
Cme04g01998 Cme-Chr4:27572567 Cme03g01633 Cme-Chr3:25164671 7.92E-40 transposed
Cme05g00938 Cme-Chr5:12910808 Cme03g01633 Cme-Chr3:25164671 1.37E-47 transposed
Cme06g00784 Cme-Chr6:5195401 Cme03g01633 Cme-Chr3:25164671 9.73E-33 transposed
Cme08g00593 Cme-Chr8:3782238 Cme03g01633 Cme-Chr3:25164671 3.74E-47 transposed
Cme01g02574 Cme-Chr1:33587370 Cme03g01633 Cme-Chr3:25164671 8.21E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g454 . . . . . . . . Cmo05g00404 . . Cma05g00393 . . Sed08g1315 . . Bhi04g00983 Tan02g2709 Cmetu01g0189 . Hepe10g0266 . Lcy13g1768 . . . . . . . . . . . . . . Cme03g01633 . . . . . . . . . . . . . . . Cpe11g00336 . . . . . . . . Cla08g01321 Cam08g1782 Cec08g1360 Cco08g1487 Clacu08g1476 . Cre08g1265 Lsi08g01189 . Chy03g01135 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000204 0 10 0 0 0 5 0 11 3 11 4 4 8 15 11 14 4 0 7 7 7 2 2 6 7 13 6 8 4 2 171