Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01649 ATGAGCAATATTATTGTCCCTCTACCAGCCAACGTTGTCCCAGACATAGGCGATCCAGGATGGATGAGCAAAGGCGACAACGCATGGCAAATGACGGCGGCGACGTTAGTCGGACTACAAAGCGTACCGGGACTAATAATTCTATATGGGGGAGCGGTTAAGAAGAAATGGGCGATAAACTCAGCGTTTATGGCTCTATATGCGTTTGCGTGTGTGTTGGTGTGTTGGGTTGGGTGGGGTTATCGGCTGTCGTTTGGGGAAAAATTGGTGCCGTTCTGGGGGAAGCTGAATGTGGCATTGGATCAAGAGTATCTGTTGCAACAAGGTTTTGCTGGGAAGTTTCCAGCGGCAACAATGGTGTTTTTTCAATTTGTGTTTGCGGCAATTACATTGGTTCTGATTGCTGGGGCTTTGCTGGGGCGTATGAATTTTTATGCTTGGATGTTGTTTGTGCCACTTTGGCTTACGTTTTCTTATACGTTTGTGGCGTTTAGTATTTGGAGTCCTGAGGGGTTTTTTGCTAAAATGGGACTCATTGATTACTCTGGTGGTTATGTTATTCATTTGTCCTCTGGTGTTGCTGGCTTCACTGCTGCTTATTGGGTTGGGCCACGGTTGTCGAAGGACAGAGAAAGCTTCCCTCCGAACAACATTCTTCTCATGCTAGCGGGAGCAGGGCTGTTGTGGATGGGTTGGACTGGTTTTAACGGGGGCGACCCCTACGCCGCCAACATCGACGCCTCACTGGCTGTTCTTAACACCCACGTTTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGACATCATCTTCTTCAGAAAGCCCTCTGTCATCGGCGCCGTCCAGGGCATGATCACCGGCCTCGTTTGCATCACCCCCGCCGCAGGAGTTGTTCAAGGATGGGCAGCAATTATAATGGGAGTGCTATCAGGTTCAATCCCATGGTTCACAATGATGGTTGTTCACAAGAAATCCGCCATTCTTCAAAAGGTAGACGACACAATGGCCGTCCTCCACACCCACGCCATCGCCGGCAGCCTCGGTGGCATTTTAAGCGGCATCTTCGCCGAGCCACACCTCAACAATATCTTCTACGGCAACTACAACCAATACATCGGCCTTTTCTACGGCTTCAATACAAAACAAGTCAGACTCGGCTTCCGCCAACTCGGCGTCCAACTCCTCGGAATCATCTTCGTCACCCTCCTCAACGTCATCGTTACTAGCCTTATCTGCGTCCTCCTCCAATACATTGTCCCGCTCCGGATGTCGGAGGAGGACATGGCTATCGGAGACGAAGCCGCCCACGGTGAAGAGGCCTACGCCATTTGGGGCCAAGGTGAGAAGATGGATTCTTCTAAGTATGATGTAGAGGCCCCAATTGCGGCCGCTAAACATAGGCATGCAGCTGGTCAGGTTGAAATGACTTGA 1434 50.84 MSNIIVPLPANVVPDIGDPGWMSKGDNAWQMTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGEKLVPFWGKLNVALDQEYLLQQGFAGKFPAATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPEGFFAKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAVLNTHVCTATSLLTWLIFDIIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGVLSGSIPWFTMMVVHKKSAILQKVDDTMAVLHTHAIAGSLGGILSGIFAEPHLNNIFYGNYNQYIGLFYGFNTKQVRLGFRQLGVQLLGIIFVTLLNVIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDVEAPIAAAKHRHAAGQVEMT 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25286941 25289560 - MELO3C011231.2.1 Cme03g01649 323660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01649 477 PANTHER AMMONIUM TRANSPORTER MEP2 6 477 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cme03g01649 477 Pfam Ammonium Transporter Family 28 442 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cme03g01649 477 SUPERFAMILY Ammonium transporter 21 424 - -
Cme03g01649 477 PANTHER AMMONIUM TRANSPORTER 6 477 - -
Cme03g01649 477 TIGRFAM amt: ammonium transporter 26 442 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cme03g01649 477 ProSitePatterns Ammonium transporters signature. 180 205 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cme03g01649 477 Gene3D Ammonium transporter AmtB like domains 17 446 IPR029020 -
Cme03g01649 477 PRINTS Rhesus blood group protein signature 123 139 IPR002229 GO:0005887
Cme03g01649 477 PRINTS Rhesus blood group protein signature 219 237 IPR002229 GO:0005887
Cme03g01649 477 PRINTS Rhesus blood group protein signature 250 272 IPR002229 GO:0005887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01649 Cme-Chr3:25286941 Cme04g02747 Cme-Chr4:32753758 5.51E-178 dispersed
Cme03g01649 Cme-Chr3:25286941 Cme05g00647 Cme-Chr5:6930540 2.35E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01649 K03320 - csv:101210590 924.85