Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01656 ATGTCTACCGCCGCTGTCCTTGCGCGTTCTAGCTCCTGGGCTCGCGCTCTCGTCAACATCTCCCCCTACACTTTCTCCGCCATCGGCATCGCCATCGCCATCGGCGTTTCCGTCCTCGGTGCCGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCGGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGTGTAATTTTCTGTGAAGCTGTTGCTATATATGGTGTCATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTGTCAGCATCTCAGATATATGCTCCCGAGTCTCTAAGAGCAGGATACGCAATATTTGCTTCTGGAATCATAGTTGGCTTTGCAAACCTCGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAGAACTCCTCCCTTTTTGTGAAGATTCTTGTAATCGAGATCTTTGGCAGTGCACTTGGGTTGTTCGGAGTAATTGTTGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGAGAGGTTAA 549 48.82 MSTAAVLARSSSWARALVNISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKRG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25321473 25323359 - MELO3C011225.2.1 Cme03g01656 323667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01656 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Cme03g01656 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Cme03g01656 182 Gene3D - 23 177 IPR035921 -
Cme03g01656 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme03g01656 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme03g01656 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme03g01656 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme03g01656 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Cme03g01656 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Cme03g01656 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cme03g01656 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cme03g01656 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Cme03g01656 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01656 K03661 ATPeV0B, ATP6F; V-type H+-transporting ATPase 21kDa proteolipid subunit - csv:101221052 325.094
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01656 Cme-Chr3:25321473 Cme06g00382 Cme-Chr6:2410531 1.32E-09 dispersed
Cme03g01900 Cme-Chr3:27140020 Cme03g01656 Cme-Chr3:25321473 7.58E-22 transposed
Cme03g01656 Cme-Chr3:25321473 Cme04g00385 Cme-Chr4:3091602 3.43E-96 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme01g01362 . 66 878 Primary Pumps ATPases(2) AT2G21410 75.8 0.0e+00 1234.2
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT2G21410 62.5 2.3e-298 1021.5
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT2G21410 76.9 1.2e-238 823.2
Cme01g01362 . 68 878 Primary Pumps ATPases(2) AT4G39080 77.1 0.0e+00 1240.3
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT4G39080 63.4 2.6e-297 1018.1
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT4G39080 77.8 1.6e-238 822.8
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme03g01900 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cme06g00383 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme06g00382 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00383 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme06g00382 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme03g01900 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cme03g01656 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.7 2.3e-70 262.3
Cme04g00385 . 7 160 Primary Pumps ATPases(2) AT2G25610 83.8 5.7e-61 231.1
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.8e-60 227.6
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme03g01656 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.9e-71 265.8
Cme04g00385 . 1 160 Primary Pumps ATPases(2) AT4G32530 73.7 8.7e-64 240.4
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.2 0.0e+00 1666.0
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1669.8
Cme12g00230 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.8 0.0e+00 1319.7
Cme02g00511 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.3e-57 219.2
Cme01g01238 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.3e-268 920.2
Cme04g02533 . 2 109 Primary Pumps ATPases(2) AT3G01390 79.6 3.6e-37 151.0
Cme09g01067 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.0 5.3e-181 630.6
Cme05g00306 . 63 323 Primary Pumps ATPases(2) AT3G58730 81.6 8.4e-117 416.8
Cme04g02122 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.2
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme01g01238 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 1.1e-269 925.6
Cme06g01749 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 6.5e-66 247.3
Cme01g01238 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.1e-266 912.5
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 6.1e-192 666.8
Cme06g01749 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.7e-90 327.0
Cme01g02735 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.1 0.0e+00 1172.1
Cme01g01238 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.3e-268 920.2
Cme01g01238 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 1.1e-269 925.6
Cme01g01238 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.1e-266 912.5
Cme09g01067 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.0 5.3e-181 630.6
Cme05g00306 . 63 323 Primary Pumps ATPases(2) AT3G58730 81.6 8.4e-117 416.8
Cme06g01749 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.7e-90 327.0
Cme06g01749 . 1 223 Primary Pumps ATPases(2) AT3G08560 69.5 6.5e-76 280.8
Cme06g01749 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 6.5e-66 247.3
Cme02g00511 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.3e-57 219.2
Cme04g02533 . 2 109 Primary Pumps ATPases(2) AT3G01390 79.6 3.6e-37 151.0
Cme04g02122 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.2
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme01g01362 . 66 878 Primary Pumps ATPases(2) AT2G21410 75.8 0.0e+00 1234.2
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT2G21410 62.5 2.3e-298 1021.5
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT2G21410 76.9 1.2e-238 823.2
Cme01g01362 . 68 878 Primary Pumps ATPases(2) AT4G39080 77.1 0.0e+00 1240.3
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT4G39080 63.4 2.6e-297 1018.1
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT4G39080 77.8 1.6e-238 822.8
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00383 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme06g00382 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme03g01900 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.8e-60 227.6
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme03g01900 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cme06g00383 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme06g00382 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme03g01656 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.9e-71 265.8
Cme04g00385 . 1 160 Primary Pumps ATPases(2) AT4G32530 73.7 8.7e-64 240.4
Cme03g01656 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.7 2.3e-70 262.3
Cme04g00385 . 7 160 Primary Pumps ATPases(2) AT2G25610 83.8 5.7e-61 231.1
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 5.3e-199 690.3
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 6.1e-192 666.8
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.2 0.0e+00 1666.0
Cme12g00230 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.8 0.0e+00 1319.7
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1669.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001947 2 4 2 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 1 1 2 1 2 2 3 3 2 66