Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01656 ATGTCTACCGCCGCTGTCCTTGCGCGTTCTAGCTCCTGGGCTCGCGCTCTCGTCAACATCTCCCCCTACACTTTCTCCGCCATCGGCATCGCCATCGCCATCGGCGTTTCCGTCCTCGGTGCCGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCGGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGTGTAATTTTCTGTGAAGCTGTTGCTATATATGGTGTCATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTGTCAGCATCTCAGATATATGCTCCCGAGTCTCTAAGAGCAGGATACGCAATATTTGCTTCTGGAATCATAGTTGGCTTTGCAAACCTCGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAGAACTCCTCCCTTTTTGTGAAGATTCTTGTAATCGAGATCTTTGGCAGTGCACTTGGGTTGTTCGGAGTAATTGTTGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGAGAGGTTAA 549 48.82 MSTAAVLARSSSWARALVNISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKRG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25321473 25323359 - MELO3C011225.2.1 Cme03g01656 323667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01656 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Cme03g01656 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Cme03g01656 182 Gene3D - 23 177 IPR035921 -
Cme03g01656 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme03g01656 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme03g01656 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme03g01656 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme03g01656 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Cme03g01656 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Cme03g01656 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cme03g01656 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cme03g01656 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Cme03g01656 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01656 Cme-Chr3:25321473 Cme06g00382 Cme-Chr6:2410531 1.32E-09 dispersed
Cme03g01900 Cme-Chr3:27140020 Cme03g01656 Cme-Chr3:25321473 7.58E-22 transposed
Cme03g01656 Cme-Chr3:25321473 Cme04g00385 Cme-Chr4:3091602 3.43E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01656 K03661 - csv:101221052 325.094