Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01659 ATGGCTTCTTGCAAAGACCAAGAAGATGATCACCACAAACAAGAACCACCCCCCAAATGCATATGGGTTCACGGCCCTATCATTGTAGGTGCAGGCCCCTCAGGATTAGCCGCCGCCGCTTGTCTTTCTCACAATCAAATCCCTTCCCTCATTCTTGAAAAATCCGATTGTATTGCTTCTCTTTGGCAGTATCGCACTTACGATCGTCTCAAACTTCATCTCCCCAAACAATTTTGTGAGCTTCCTCTTATGGGTTTCCCTGAAAATTTCCCCAAGTACCCTTCTAAAGATCAGTTCATTTCTTACATGGAATCTTACGCTTCTCATTTCTCTATCCATCCTCGGTTCAATCAGACCGTTCTCGCCGCTGAATTCGACTCAGTTTCTGGGTTCTGGAAGGTCTCCACTCAGGATTCTCAGTACATTTCGCGATGGATCGTCGTCGCTACAGGGGAAAATGCAGAGCCAGTTATTCCTGAGATTGTTGGGATTGAGCGGTTTGCTCGAACCGTTGTTCATACGAGTATGTATAAGTCCGGTACGGAATTTAAAAACCAACGGGTTTTGGTCGTCGGTTGCGGGAATTCCGGTATGGAAGTTAGTTTAGACCTTTGTAGACAAAATGCCATTCCACATATGGTTGTTAGAAACACAGTTCATGTGTTACCGCGAGAAATGTTCGGATTCTCGACATTTGGAATTGCCATGGGGCTGATGAAATGGCTACCTCTAAGACTGGTGGATAAGATTCTTCTTTTAGTAGCCAGCTTGACTCTAGGCAATACTGATCATTTAGGTCTCCGGCGACCGAAAACCGGTCCAATCGAGCTTAAAAACGCCACAGGAAAGACCCCGGTTCTCGACGTTGGAGCCCTGTCCCAAATTAGATCGGGAAAGATCAAGGTAATGGAAGGGGTAAAAGAGATAACGAGAAATGGAGCGAAGTTCATAGACGGACAAGAGAAAGAGTTCGATTCAATCATCTTAGCGACGGGGTATAGAAGCAATGTGCCAAGTTGGCTCAAGTCAAAATCTCAAGATTATCACAGGTGGAATAAGCAGGGGTGTGATTTTTTCACTAAAGATGGAATGCCGAAAACCCCATTTCCAGACGGGTGGAAAGGTGAGAGGGGGTTGTACACCGTCGGGTTTACTCGAAGGGGACTACTCGGAACAGCGTCGGACGCTATGAAAATCGCCAACGACGTAGCCGAGCAATGGCGGACGATGCCCGGGAATAAAGATGGCAAGAATTGTTCTACTTCTTACGTGATATTCCTTAAAGAATCCAAACGAAAATGA 1302 46.01 MASCKDQEDDHHKQEPPPKCIWVHGPIIVGAGPSGLAAAACLSHNQIPSLILEKSDCIASLWQYRTYDRLKLHLPKQFCELPLMGFPENFPKYPSKDQFISYMESYASHFSIHPRFNQTVLAAEFDSVSGFWKVSTQDSQYISRWIVVATGENAEPVIPEIVGIERFARTVVHTSMYKSGTEFKNQRVLVVGCGNSGMEVSLDLCRQNAIPHMVVRNTVHVLPREMFGFSTFGIAMGLMKWLPLRLVDKILLLVASLTLGNTDHLGLRRPKTGPIELKNATGKTPVLDVGALSQIRSGKIKVMEGVKEITRNGAKFIDGQEKEFDSIILATGYRSNVPSWLKSKSQDYHRWNKQGCDFFTKDGMPKTPFPDGWKGERGLYTVGFTRRGLLGTASDAMKIANDVAEQWRTMPGNKDGKNCSTSYVIFLKESKRK 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25357178 25359789 + MELO3C011221.2.1 Cme03g01659 323670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01659 433 Gene3D - 26 409 IPR036188 -
Cme03g01659 433 Pfam Pyridine nucleotide-disulphide oxidoreductase 27 218 - -
Cme03g01659 433 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 15 422 - -
Cme03g01659 433 SUPERFAMILY FAD/NAD(P)-binding domain 186 408 IPR036188 -
Cme03g01659 433 SUPERFAMILY FAD/NAD(P)-binding domain 27 216 IPR036188 -
Cme03g01659 433 PRINTS Pyridine nucleotide disulphide reductase class-II signature 183 207 - -
Cme03g01659 433 PRINTS Pyridine nucleotide disulphide reductase class-II signature 25 47 - -
Cme03g01659 433 PRINTS Pyridine nucleotide disulphide reductase class-II signature 144 152 - -
Cme03g01659 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 26 45 - -
Cme03g01659 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 187 205 - -
Cme03g01659 433 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA1-RELATED 15 422 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01659 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - csv:101221527 833.558
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01659 Cme-Chr3:25357178 Cme04g00923 Cme-Chr4:12360411 1.28E-178 dispersed
Cme03g01659 Cme-Chr3:25357178 Cme06g00434 Cme-Chr6:2738894 1.54E-180 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g423 . . . . Bpe02g01231 . . . Cmo05g00687 Cmo12g00265 . Cma05g00655 . Car12g00294 . . . . . . . . . . . . . . . . . . . . . . . . Cme03g01659 . . . . . . . . . . . . Cma12g00313 . . Cpe11g00582 . . . . . . . . . . . . . . . Lsi08g01158 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007846 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36