Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01666 ATGGCCGACTGGCTGATCGGAGAAGATGTTGAAATGAAGCTTTCTCTGGTGCTCCGTGCATTTCCTTGTCCATACACAACAAATCTGTTGAATATGATGAAAGAAATTAAGGGTGCTGTCAGAATCACACGATCCCAGTCTAAGTCTTCCAGTAGAATAGGTGCTATTTCACCCTCATTACAACTTTCACTCACAGAATTGCGCAAACGTGGTCATACAGAAAACTCTGAACTAGCACAGCTAGATGGAAGTAATGCTTCTGCTACTATTACTGTTGGTGTTCGGCGCAAAAGAAGAGCAGTGCTCAAGGATGTTACTAACATGTCCTGTGAGAGTAATAATTCGGGGTACTTGCATGCTTCTAAAGTTCAGGTTTCACAGACCGAATCACTTGAAGATTCATCCATTATAGGGATGGTAGAATCACAACGTAGCTCTCCAGCGATGAAGTCAGACAAAAAAGAGACAAAGCAGGAGAATAAGTTTCAGAGTGTCATAGGATGCAGAAATTGTGCGTCTCCCCTGCCTTCAGGATCAAATGAACACCAAATGAAAGATGAGGCTGCGGTTTGTGAGAAATTAAACCATCTCGGTACTTTGGATGCTGTCTCAAACTCAGAGGATCCTCAAGCATGCACCCTATACGCCCATAATATATATGATACTAATCGTGTAATAGAGCTTGATCAAAGGCCTTCGACTAATTATATGGAAAAGTTACAGAAATATATCACTCCAATCATGCGAGGGATTCTAATCGATTGGCTTGTGGAGGTTTCTGATGAATATAAATTGATCTCTGACACGCTTTACCTCACTGTAAATCTCATCGATCGGTTTCTCTCTCAAAGCTGCATTGAGAGGCATAAATTACAACTTCTTGGCGTTACTTGCATTAAATATGAAGAAGTCTGTGCACCATTCGTGGAAGAGTTTTGCTTCATCACAGACAACACCTATGCGAGAGAAGAGGTACTAAAAATGGAGGGTGAAGTTCTGAACGTGCTTAATTTTCAGCTGTCGGTTCCCACTACAAAAACATTTCTCAGGAGATTTGTGCAGGTAGCACAGGCTTCTTGCAAGGAATCTTGTGTGGAGTTGGAGCATTTAACAAATTATCTAGCAGAGTTGACTCTTGGAGAGTACAGCTTCCTCAGGTTTCTGCCTTCAGCAGTAGCTGCATCAGTTGTGTTCTTAGCTAGATGGATTCTGCACCAACCAAATCAACCATGGAACTCGGCTCTGGAGCATTATACCAATTACAATGCCTCTCAGCTAAAAACTCCTGTACTTGCCTTGGAAGATCTAAGGTTGAACTCCACAAGTTGCGGTTTAAACGCCGTCTTCCAGAAGTATAGACAACATAAGTTTGGAAGTGTGGCAACTTTAGCCTCCACAAAATCAGTTCTCTCAGCCTTCCCAAACCAGACAGATAACCTGAATTCCAGGGACATTTGA 1458 42.25 MADWLIGEDVEMKLSLVLRAFPCPYTTNLLNMMKEIKGAVRITRSQSKSSSRIGAISPSLQLSLTELRKRGHTENSELAQLDGSNASATITVGVRRKRRAVLKDVTNMSCESNNSGYLHASKVQVSQTESLEDSSIIGMVESQRSSPAMKSDKKETKQENKFQSVIGCRNCASPLPSGSNEHQMKDEAAVCEKLNHLGTLDAVSNSEDPQACTLYAHNIYDTNRVIELDQRPSTNYMEKLQKYITPIMRGILIDWLVEVSDEYKLISDTLYLTVNLIDRFLSQSCIERHKLQLLGVTCIKYEEVCAPFVEEFCFITDNTYAREEVLKMEGEVLNVLNFQLSVPTTKTFLRRFVQVAQASCKESCVELEHLTNYLAELTLGEYSFLRFLPSAVAASVVFLARWILHQPNQPWNSALEHYTNYNASQLKTPVLALEDLRLNSTSCGLNAVFQKYRQHKFGSVATLASTKSVLSAFPNQTDNLNSRDI 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25418164 25426263 + MELO3C011215.2.1 Cme03g01666 323677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01666 485 Pfam Cyclin, N-terminal domain 219 341 IPR006671 -
Cme03g01666 485 SUPERFAMILY Cyclin-like 342 466 IPR036915 -
Cme03g01666 485 CDD CYCLIN 341 421 IPR013763 -
Cme03g01666 485 Pfam Cyclin, C-terminal domain 343 464 IPR004367 -
Cme03g01666 485 SMART Cyclin_C_2 343 466 IPR004367 -
Cme03g01666 485 Gene3D - 232 341 - -
Cme03g01666 485 SUPERFAMILY Cyclin-like 207 340 IPR036915 -
Cme03g01666 485 CDD CYCLIN 248 333 IPR013763 -
Cme03g01666 485 Gene3D - 219 462 - -
Cme03g01666 485 PANTHER CYCLIN-A2-4 76 468 - -
Cme03g01666 485 PANTHER CYCLINS 76 468 IPR039361 -
Cme03g01666 485 SMART cyclin_7 254 334 IPR013763 -
Cme03g01666 485 SMART cyclin_7 347 435 IPR013763 -
Cme03g01666 485 ProSitePatterns Cyclins signature. 249 280 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02653 Cme-Chr1:34000856 Cme03g01666 Cme-Chr3:25418164 9.36E-117 dispersed
Cme03g01666 Cme-Chr3:25418164 Cme07g00308 Cme-Chr7:1981391 2.69E-90 dispersed
Cme03g01666 Cme-Chr3:25418164 Cme04g00381 Cme-Chr4:3058212 1.52E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01666 K06627 - csv:101211578 850.121