Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01669 ATGGACGTTCCCTCAGTGGAACTAAACTGTGATAGTGAAGGAGACTCTTACCCTTTATTAATGGCACGACCTGAACATTCTAACAGCAGTGAGCATATCATTGACATAACTGGTGCTGGTGATTCTGCCTCCTCTAGTCTGCCACGTGGTAGGAGTTCAAATGGCTTAAATTCATTGCAGCCTGAAGATAGACCTTCAAGTAATACACGAGTTCCCTTGTCTCAACCCCCAATTTCTTCTACTGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCACGACGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATAATTGCAGCTATTATTGTCTTATCATTGTCAAAGAATGAAAAACCCCGTGCCCCTTTGTTTGCATGGATTGTGGGATATGCATCTGGATGTGGTGCCACCCTTCCTCTTCTCTACTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAAGATTCTCTTCAGTCCAGCCAGAATTCTTCTCGCATTAATGTTCCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGAAGGGGAAGAACTTCAGCATCCTGCCCCATCTCCTAGAGGCAGTCAAGGGTCAGGAGTACTATCAGCAAGATTAAAAGTTCTGGTTGAATATTTTAAGATGGGTCTGGATTGCTTCTTTGCTGTTTGGTTTGTAGTTGGTAACGTATGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAACTTGTACAGGCTATGTATAGTGTTTCTTACCTTCAGCTGTATTGGTTATGCAATGCCTTTCATTCTATGTGTAACCATCTGCTGTTGTCTTCCTTGTATAATTTCCATCCTTGGGTTTAGAGAGGACTTGACACAGACACGAGGAGCCACATCGGAATCTATTAATGCATTACCAACTTATAAGTTTAAACTGAAGAAAAGTAGAAGTGGGGATGATAGAGAGAACAATTCCGGGACTGGTGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCTGGAGAAGATGCTGTCTGTTGCATCTGCCTGGCAAAATACGCCAACAATGATGAACTGAGAGAGTTGCCATGTTCACACTTTTTCCACAAGGACTGCGTAGATAAGTGGTTGAAGATCAACGCTCTGTGCCCGCTTTGCAAAGCCGAGGTTGGTGAGAGTATCATCAGCTCTCTCGAGGGGACAAACAGACAACAGGGTGATTAG 1275 44.08 MDVPSVELNCDSEGDSYPLLMARPEHSNSSEHIIDITGAGDSASSSLPRGRSSNGLNSLQPEDRPSSNTRVPLSQPPISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQSSQNSSRINVPAGPFSLSVSRASEGEELQHPAPSPRGSQGSGVLSARLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATSESINALPTYKFKLKKSRSGDDRENNSGTGEGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKAEVGESIISSLEGTNRQQGD 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25438904 25444006 + MELO3C011213.2.1 Cme03g01669 323680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01669 424 CDD RING-H2_RNF111_like 362 404 - -
Cme03g01669 424 SMART ringv_2 362 404 IPR011016 GO:0008270
Cme03g01669 424 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Cme03g01669 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 411 IPR013083 -
Cme03g01669 424 Pfam Ring finger domain 363 404 IPR001841 -
Cme03g01669 424 MobiDBLite consensus disorder prediction 325 344 - -
Cme03g01669 424 SMART ring_2 363 403 IPR001841 -
Cme03g01669 424 MobiDBLite consensus disorder prediction 1 97 - -
Cme03g01669 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 421 - -
Cme03g01669 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 421 - -
Cme03g01669 424 SUPERFAMILY RING/U-box 355 409 - -
Cme03g01669 424 MobiDBLite consensus disorder prediction 31 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00873 Cme-Chr1:9955188 Cme03g01669 Cme-Chr3:25438904 6.90E-58 dispersed
Cme03g01669 Cme-Chr3:25438904 Cme06g02670 Cme-Chr6:33787738 1.84E-44 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01669 - - csv:101211818 802.357