Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01671 ATGGCTGTCAAAACAGCTCATTCATTTAGAGATCGGACGCTGGAATTTCAGAACATAACAGAGAGGCTAAAGAAGTCTTTCTCTTCTGGCACGGGAACAACTGGACCAAGTGCTGTTTCAAAATCAGAAGAGCAGCGCTCTGCTGTGGCCCTACAGTCTGAATTTAATAAAAGGGCTTCCAAGATTGGGTTAGGGATACACCAGACGTCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCTGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCTCTTATTAAGCAGGACATTACAACATTGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGATACTACTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGATTGATGAGCACGACAAAAGAATTTAAAGAAGTCCTGACCATGCGAACTGAAAATTTGAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTGTTCGCCAGCGCCCATTAGCATCCAGGTCAGCTTCTGGTGCCCCAAGCGCAGCCCCTCCTCCATGGGCCAAGGCATCTACATCTTTTTCCAAAGCATCTCCCGGGAAGCAGGTGGATGGGGAGGGTCAACCATTGTTGCAGCAGCAGCAGCAGCAGCAGCAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTAAGCAATATCTTCAACCAGCTAGCGACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGATCGATGAAAACATGGATGATACTCTGGCAAATGTGGAGGGGGCACAGGGAGCTTTGCTCAAGTATCTAAGCAGTATATCATCAAATAGATGGTTGATGATCAAAATTTTCTTTGTACTAATATTCTTCCTCATGGTTTTCCTATTTTTTGTGGCATAG 1017 42.97 MAVKTAHSFRDRTLEFQNITERLKKSFSSGTGTTGPSAVSKSEEQRSAVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSASGAPSAAPPPWAKASTSFSKASPGKQVDGEGQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDTLANVEGAQGALLKYLSSISSNRWLMIKIFFVLIFFLMVFLFFVA 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25449299 25455100 - MELO3C011211.2.1 Cme03g01671 323682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01671 338 SMART tSNARE_6 241 308 IPR000727 -
Cme03g01671 338 Pfam SNARE domain 282 334 IPR000727 -
Cme03g01671 338 CDD SNARE_syntaxin5 249 327 - -
Cme03g01671 338 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 25 IPR021538 -
Cme03g01671 338 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cme03g01671 338 Gene3D - 50 301 - -
Cme03g01671 338 PANTHER SYNTAXIN 7 337 IPR045242 -
Cme03g01671 338 MobiDBLite consensus disorder prediction 168 239 - -
Cme03g01671 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
Cme03g01671 338 MobiDBLite consensus disorder prediction 170 191 - -
Cme03g01671 338 PANTHER SYNTAXIN-32-LIKE 7 337 - -
Cme03g01671 338 SUPERFAMILY t-snare proteins 52 301 IPR010989 GO:0016020|GO:0016192
Cme03g01671 338 MobiDBLite consensus disorder prediction 26 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01671 Cme-Chr3:25449299 Cme10g01057 Cme-Chr10:9048851 1.47E-108 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01671 K08490 - csv:101203633 541.962