Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01678 ATGAGCCGACCCACTACACGTAGTAAGAACAAAAGGCATAAACAGGAGGACAATGCTGATATCAGTTCTGATTTATTGAGGAAAATTCACTCATCTGGGGCAATAACCAAAGATGACATCAATCAGCTCTATATGATCTGGAAGCCAAATTGTCAAGGATGCCGGCTGAATACTAAGGATAACCCAAATTGTTTCTGTGGGCTGATTCCACCGCCTACGGGGAGCAGGAAGGTTGGCTTATGGCAGAAGATTTCAGAAATCGTGCAAGCTCTTGGTTCAGATCCTTCCAAGGATCAACGTACTTCTCCTGATTTTCCCGCTGGTCTTACAAATCTTGGTGCAACTTGCTATGCCAATAGCATCCTCCAGTGTCTGTACATGAACAAGTGCTTCAGGGAAGGCATATTTTCTGTGGAGTCAGATGTTCTGAAACAAAATCCAGTTCTAGATCAGCTTGTACGACTCTTTGCTCTCCTCCATGCCAGTAAAATGGCTTATGTGGATTCATTTCCTTTTATAAAAACACTGGAGTTAGATAATGGAGTCCAGCAGGATAGTCATGAGTTCCTGACTTTGCTTCTTTCTCTGCTGGAGCATTGCTTGAGTCACTCAAAAGTTTCTAAAGCGAAAACTATTGTTCAAGATCTTTTCCGTGGAAGTGTGTCTCATGTAACGACGTGCTCACAGTGCGGAAAAGATTCCGATGCCTCTTCCAAAATGGAGGACTTCTATGAATTGGAGTTGAATGTTCTGGGCTTGAAAAGTTTGGATGAAAGTTTAAATGATTATCTTAGTGTGGAAGAGCTTCATGGTGATAATCAATACTTTTGCGAGTCATGTAAATCTAGAGTTAATGCCACTCGCAGCATCAAGCTACGTACATTGCCCCCTGTTCTAAATTTTCAGCTTAAGCGATGTGTTTTTCTTCCAAAGACTACAACCAAGAAGAAAATCACATCTGCACTTTCTTTTCCTGGAGTGTTGGATATGCGGGAGAGATTAGCTGAGTCTTCGCAGTCTGAATCAATATATGACTTGTCAGCAGTTCTGATTCATAAAGGTACTGCTGTCAACAGTGGGCATTACATAGCTCATATCAAAGATGAAAATACAGGGCAGTGGTGGGAATTTGATGATGAACATGTCTCAAAATTAGGTCACCATCCGTTTGCAGAAAAATCATCAAATACTTATTCTAAATCTGTTAAAACTGAGTTAGCTGTTCCATTGGGTTCCAAGGAAGAAGTAAATGCAACTGCAGAAGCTAATCCAACGAATGGGGTTCTTCAGCAATCAACAGAGTCTGGTGTCCGTTGTCCCACTGACGTCTTTTCATCTAATGATGCCTATATGCTGATGTATAATTTAAGGTGCACAGGAAAGGCCGCAAATAGAGTTACTAGCTGTATCGTTAATGGTAAAGAAGTAGAAAGCAACATGGTTCCTTTCCAGGACGGCCTGTTTCTTCCATTGCATCTGTGTGATGAGATAAGTAGTTTAAATGAATCGCATGTTATAGCTTGCCAAGAATATGAATCAAAGAAGGAAGTTGAACTGGGTTGTATCAATAATCGGAGGCAGGAGGTCCGATCAATTTTGTCTGAAGCCCCTGTTCACTCACTTGAGGAACCCTTTTGTTGGATTTCCACTGACTGGCTTCGCCAATGGGCTGATAAGGTCTCCCCACCCATTCTTGATAATTCACAAATACAGTGTTTGCACGGAAAAGTTCCAATATCAAAGGTAACCAGCATAAAGAGACTGTCAATGAAGGCTTGGGATAAGCTATCCTCCAAGTATGGTGGGGGCCCAAAACTGACAAATGAAGATATCTGTATGGACTGCCTTATCGCTGGTGCTCGAAATGTAGTTTGTGCTGACAGCTACAGGGACCGGAGAATATCAATGAAAGAAATTGCGTTAAGTGCACTTTCGGGAAATTATCCAAATGGAGCATATGTTGTTTCTAGGACATGGTTGCAACAGTGGGTTAAAAGGAAAATTCTTGATGCTCCTTCTGAAGCCGATGCTGAACCAACAGCCTCAATCAAGTGTTCTCATGGACAACTTTTGCCAGAGCAAGCTGCCGGTGCTAAGCGAGTGCTGATTCCAGAAGATCTCTGGCTTTTCATTTATGAAGATGCTTTTACTGTAAAACCTGATGATCCTACAGGGGTTCCAACTTTTCCCTCTGATTCAAGACAATGCTCTCTGTGCAGTGAGGAATTGTCTGAAGTGGCAGTTATGGAAGATTCTATAAGAGGAGTGAAGCTTAAACAGCGACAAAATCACGAAAGATTAGCCGTTGGAAAATTCATTCCACTTTCTTTGAATTGCAAGTATTATTTGGTGCCTACATCATGGCTTTCAAAGTGGAGAAACTACATCAATGCAAGTGGAAAGAGTGCTTCATTTGTAGAGAAGCCTGAAAATTTGGATGGTGTGATCAATCTTCTGAGGTGTGAAAAGCATTCCCGCCTCCTTGAAAGACCTCCTGACCTGATCTGCAAACGTGGTACGGTGCAGCAGAAGTCTGCTGCAGATGTTTTAACAATCATTTCAGAGAACGACTGGAAATTTTTCTGTGAAGAGTGGGAAGGTAGTGAGGCATGTGGCATCTCTGCTTTGGTTGAGTCAAGTAGTTGTGTAGGGAATGATATGGATGGATCCTCCAAAGAGAAGACAATGGCTGAAGAGGATCTCTGTTCCAATGATGATGTTAACAATGGGGACTTCAAACAAATTCTACTAAAGACTGATCCTGAGATATGTGAAGAATGTATAGGAGAACGAGAAAGCTGTGAGCTAATGCAGAAACTAAACTATACCGGCGAGGATATTTGTGTATATTTTTCCCGTGGGAAGGATGCTCCAAAATCAATTTTGGAAGCTCCTGAGTCCACTGTTGATCCAGATCGTCGTATCTCAAAGCGTGCAAGGAAGACAAATTCAGGGAATTTTGTGAATCTTAAAGTTTCTGGTTCGACATCAGTGTACCAGTTAAAAATGATGATATGGGAATGTTTTGGGGTTGTGAAGGAAAACCAGATACTTCGCAAAGGTAATAGGATAATTGATGGAGAAACTGATACTTTGGCAGACAAGAATATATTTCCTGGAGACAAACTATGGGTAATGGATTCTGAAATTCATGAACATCGAGATATTGCTGACGAGCTTTCCGATCCCAAAATGAATATCCAACATACTGAGGAAGGGTTTCGTGGAACGCTTTTGGCTGCTAATGTTTCATCTGAAGTTGTTTAA 3267 41.57 MSRPTTRSKNKRHKQEDNADISSDLLRKIHSSGAITKDDINQLYMIWKPNCQGCRLNTKDNPNCFCGLIPPPTGSRKVGLWQKISEIVQALGSDPSKDQRTSPDFPAGLTNLGATCYANSILQCLYMNKCFREGIFSVESDVLKQNPVLDQLVRLFALLHASKMAYVDSFPFIKTLELDNGVQQDSHEFLTLLLSLLEHCLSHSKVSKAKTIVQDLFRGSVSHVTTCSQCGKDSDASSKMEDFYELELNVLGLKSLDESLNDYLSVEELHGDNQYFCESCKSRVNATRSIKLRTLPPVLNFQLKRCVFLPKTTTKKKITSALSFPGVLDMRERLAESSQSESIYDLSAVLIHKGTAVNSGHYIAHIKDENTGQWWEFDDEHVSKLGHHPFAEKSSNTYSKSVKTELAVPLGSKEEVNATAEANPTNGVLQQSTESGVRCPTDVFSSNDAYMLMYNLRCTGKAANRVTSCIVNGKEVESNMVPFQDGLFLPLHLCDEISSLNESHVIACQEYESKKEVELGCINNRRQEVRSILSEAPVHSLEEPFCWISTDWLRQWADKVSPPILDNSQIQCLHGKVPISKVTSIKRLSMKAWDKLSSKYGGGPKLTNEDICMDCLIAGARNVVCADSYRDRRISMKEIALSALSGNYPNGAYVVSRTWLQQWVKRKILDAPSEADAEPTASIKCSHGQLLPEQAAGAKRVLIPEDLWLFIYEDAFTVKPDDPTGVPTFPSDSRQCSLCSEELSEVAVMEDSIRGVKLKQRQNHERLAVGKFIPLSLNCKYYLVPTSWLSKWRNYINASGKSASFVEKPENLDGVINLLRCEKHSRLLERPPDLICKRGTVQQKSAADVLTIISENDWKFFCEEWEGSEACGISALVESSSCVGNDMDGSSKEKTMAEEDLCSNDDVNNGDFKQILLKTDPEICEECIGERESCELMQKLNYTGEDICVYFSRGKDAPKSILEAPESTVDPDRRISKRARKTNSGNFVNLKVSGSTSVYQLKMMIWECFGVVKENQILRKGNRIIDGETDTLADKNIFPGDKLWVMDSEIHEHRDIADELSDPKMNIQHTEEGFRGTLLAANVSSEVV 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25524043 25541603 - MELO3C011203.2.1 Cme03g01678 323689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01678 1088 Gene3D - 751 871 IPR035927 -
Cme03g01678 1088 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Cme03g01678 1088 SMART dusp 538 614 IPR006615 GO:0004843
Cme03g01678 1088 ProSiteProfiles DUSP domain profile. 755 877 IPR006615 GO:0004843
Cme03g01678 1088 ProSiteProfiles DUSP domain profile. 626 734 IPR006615 GO:0004843
Cme03g01678 1088 ProSiteProfiles DUSP domain profile. 520 612 IPR006615 GO:0004843
Cme03g01678 1088 SUPERFAMILY DUSP-like 529 611 IPR035927 -
Cme03g01678 1088 SUPERFAMILY Cysteine proteinases 105 456 IPR038765 -
Cme03g01678 1088 Pfam Ubiquitin carboxyl-terminal hydrolase 108 454 IPR001394 GO:0004843|GO:0016579
Cme03g01678 1088 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 401 IPR028889 -
Cme03g01678 1088 SUPERFAMILY DUSP-like 774 869 IPR035927 -
Cme03g01678 1088 MobiDBLite consensus disorder prediction 1 23 - -
Cme03g01678 1088 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Cme03g01678 1088 Gene3D Cysteine proteinases 88 457 - -
Cme03g01678 1088 SUPERFAMILY Ubiquitin-like 981 1060 IPR029071 -
Cme03g01678 1088 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 999 - -
Cme03g01678 1088 CDD Ubl_USP48 980 1079 IPR044743 GO:0004197|GO:0004843|GO:0016579
Cme03g01678 1088 CDD Peptidase_C19L 108 454 IPR033841 GO:0004843
Cme03g01678 1088 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 999 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01678 - - K11858 csv:101204355 2151.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01678 Cme-Chr3:25524043 Cme05g00057 Cme-Chr5:359559 2.67E-30 dispersed
Cme06g01353 Cme-Chr6:11601143 Cme03g01678 Cme-Chr3:25524043 3.35E-19 dispersed
Cme03g01678 Cme-Chr3:25524043 Cme04g00241 Cme-Chr4:1900973 1.56E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g269 . . . Bda03g00459 . . . . Cmo05g00665 . . . . . Sed01g1313 . . Bhi04g01060 Tan02g2655 Cmetu03g1138 . . . . . . . . . . . . . . . Lsi04g02276 . . Cme03g01678 . . . Bda13g01355 . Bpe04g00420 . . . . . . . . Car05g00581 Cpe11g00560 . . . . . . . . Cla08g01169 Cam08g1632 Cec08g1206 Cco08g1329 Clacu08g1330 . Cre08g1114 . . Chy03g01302 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005534 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 5 1 40