Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01691 ATGGGTGGTGATCATAAAGCCATCACTCTCGAGGAGATTAAAAACGAAGCCGTTGATCTGGAGCATATTCCAATAGAGGAAGTGTTTGAACAGTTGAAATGTACTCGAGAAGGTCTTACATCAGAGGAAGGAGCCCACCGGCTTCAAGTTTTTGGACCCAACAAACTAGAAGAGAAGAAGGAAAGCAAAATTCTCAAGTTTTTGGGTTTTATGTGGAATCCTTTATCTTGGGTAATGGAAGCTGCTGCCTTAATGGCTATTGTCCTAGCAAATGGCGGTGGAAGACCACCAGATTGGCAAGACTTTGTGGGGATCATTGCTTTACTTTTTATCAACTCTACCATAAGTTTTATTGAAGAGAACAATGCTGGTAACGCGGCTGCCGCTCTCATGGCTGGTCTTGCTCCCAAAACCAAGGTTCTAAGGGATGGTCGTTGGAGTGAGCAAGAGGCTGCTATTCTTGTTCCGGGAGATATCATAAGCATTAAACTTGGAGACATAATACCAGCAGATGCCCGTCTTCTGGAAGGTGATCCTTTAAAAATTGATCAGTCTGCCTTAACTGGAGAATCACTCCCAGTCACCAAGAACCCCTCAGATGAAGTATTTTCTGGGTCTACATGTAAACAAGGTGAAATTGAAGCCGTTGTGATTGCCACTGGTGTGCACACATTTTTTGGCAAAGCAGCTCATTTGGTAGATAGCACCAATCAAGTTGGACATTTTCAGAAAGTTCTTACTGCTATTGGTAATTTCTGCATTTGCTCTATCGCTGTTGGAATACTAATCGAGCTTATAGTTATGTACCCGATACAACGGCGCAAGTATAGAGATGGGATTGACAACTTGTTGGTGCTTTTGATTGGTGGAATCCCTATTGCCATGCCAACCGTTTTATCCGTTACCATGGCCATTGGTTCTCATAGGCTTTCTCAACAGGGTGCCATTACCAAGAGAATGACAGCCATTGAGGAAATGGCTGGCATGGATGTTCTATGCAGCGATAAGACAGGAACTCTGACCTTGAACAAACTAACTGTGGATAGAAGCTTGATCGAAGTGTTTGTCAAGGGTGTTGAGAAAGAGTATGTTATTCTTCTTGCGGCCAGGGCTTCTAGAACAGAGAACCAAGATGCTATTGATGCAGCTATAGTAGGAATGCTTGCGGATCCTAAAGAGGCACGAGCAGGAATTAGAGAGGTTCATTTCCTTCCATTCAATCCCGTTGACAAAAGAACTGCCCTTACTTACATCGACTCTAATGGAACTTGGCACCGAGTAAGCAAAGGTGCCCCTGAGCAGATCCTAAATCTTTGCAACTCTAGAGAAGACGTTAGAAGGAAGGTTCATGCAGTGATTGACAAGTTTGCAGAGCGTGGACTTCGTTCGCTGGGTGTTGCAAGACAGGAAGTACCTGAAAAAACAAAAGATAGCCCTGGAGGACCGTGGCAGCTTGTCGGTTTGTTGCCTCTATTTGATCCTCCTAGACATGATAGTGCAGAAACCATAAGAAGAGCACTGAACCTTGGAGTAAATGTGAAGATGATTACTGGGGATCAACTTGCCATTGCCAAGGAAACTGGGCGTAGACTTGGTATGGGAACAAATATGTACCCTTCTTCATCATTACTAGGTCAAGACAAGGATGAATCTATTGCTTCACTTCCTGTGGATGAGTTGATTGAGAAGGCAGATGGGTTTGCTGGAGTATTCCCAGAACACAAATACGAAATTGTGAAAAGGCTGCAGGAAAGAAAACATATATGTGGAATGACCGGAGATGGTGTTAATGATGCTCCTGCTTTAAAGAAGGCAGATATCGGAATTGCTGTTGCGGATGCTACTGATGCTGCTAGAAGTGCTTCAGATATTGTCCTTACAGAACCAGGATTGAGCGTGATTATTAGTGCGGTGCTAACTAGTAGGGCTATTTTTCAGAGGATGAAGAACTACACGATTTATGCGGTTTCAATTACCATTCGTATAGTGTTTGGCTTCATGTTCATTGCCTTGATTTGGAAATTTGACTTTGCTCCCTTCATGGTTTTAATAATAGCCATTCTGAATGATGGAACAATTATGACAATTTCAAAGGATCGAGTAAAGCCATCTCCACAGCCTGATAGTTGGAAACTGAAGGAGATTTTTGGAACTGGAATTGTGCTTGGAGGATACTTAGCACTTATGACAGTGTTATTCTTTTGGGCTGTGAAAGATACAAACTTCTTCTCAGAAAAATTCAATGTGAAATCATTGAAAGATAGTCCGGAAGAATTGATGGCAGCATTGTATCTACAAGTAAGCATAATAAGCCAAGCACTAATCTTTGTGACAAGGTCACGCAGCTGGTCATACATGGAACGTCCAGGACTTCTCCTAGTGGGTGCATTCATAATAGCTCAGCTGGTGGCAACCGTGATAGCTGTATATGCAAATTGGGGATTTGCAAGGATAAAGGGAATGGGATGGGGATGGGCTGGAGTCATATGGCTCTACAGCTTGGTAACATACATTCCTTTGGACATCTTGAAATTTGGAATCAGATATGCTCATAGTGGGAAGGCTTGGGACACACTTCTGGAGAACAAGACTGCATTCACAACGAAAAAGGATTATGGAAAAGAAGAGAGAGAAGCACAGTGGGCGGCAGCACAGAGGACATTACATGGACTACAACCACCTGAAAACTCTAATCTCTTCCCGGAGAAAAGTAGTTATAGAGAGCTTTCTGAGATTGCCGAGCAAGCCAAACGTCGTGCTGAGGTTGCAAGGCTGCGAGAATTGCATACACTGAAGGGACATGTTGAGTCGGTGGTGAAGCTGAAGGGACTGGACATTGATACAATCCAACAACACTATACAGTTTAA 2868 43.27 MGGDHKAITLEEIKNEAVDLEHIPIEEVFEQLKCTREGLTSEEGAHRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIVLANGGGRPPDWQDFVGIIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGILIELIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRSLIEVFVKGVEKEYVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSNGTWHRVSKGAPEQILNLCNSREDVRRKVHAVIDKFAERGLRSLGVARQEVPEKTKDSPGGPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDESIASLPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFGTGIVLGGYLALMTVLFFWAVKDTNFFSEKFNVKSLKDSPEELMAALYLQVSIISQALIFVTRSRSWSYMERPGLLLVGAFIIAQLVATVIAVYANWGFARIKGMGWGWAGVIWLYSLVTYIPLDILKFGIRYAHSGKAWDTLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPENSNLFPEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25617688 25626608 + MELO3C011192.2.1 Cme03g01691 323702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01691 955 SUPERFAMILY HAD-like 329 639 IPR036412 -
Cme03g01691 955 Gene3D - 98 819 - -
Cme03g01691 955 Pfam haloacid dehalogenase-like hydrolase 329 606 - -
Cme03g01691 955 Coils Coil 906 926 - -
Cme03g01691 955 CDD P-type_ATPase_H 38 845 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cme03g01691 955 Pfam E1-E2 ATPase 135 312 - -
Cme03g01691 955 SUPERFAMILY Calcium ATPase, transduction domain A 136 233 IPR008250 -
Cme03g01691 955 SFLD p-type atpase 315 643 IPR044492 -
Cme03g01691 955 Pfam Cation transporter/ATPase, N-terminus 22 85 IPR004014 -
Cme03g01691 955 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 105 352 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme03g01691 955 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 567 682 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme03g01691 955 Gene3D - 345 492 IPR023299 GO:0000166
Cme03g01691 955 SMART Cation_ATPase_N_a_2 19 91 IPR004014 -
Cme03g01691 955 PANTHER PLASMA MEMBRANE ATPASE 5 935 - -
Cme03g01691 955 Gene3D - 904 955 - -
Cme03g01691 955 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 38 810 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cme03g01691 955 ProSitePatterns E1-E2 ATPases phosphorylation site. 335 341 IPR018303 -
Cme03g01691 955 SUPERFAMILY Calcium ATPase, transmembrane domain M 19 851 IPR023298 -
Cme03g01691 955 PRINTS H+-transporting ATPase (proton pump) signature 449 467 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme03g01691 955 PRINTS H+-transporting ATPase (proton pump) signature 564 580 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme03g01691 955 PRINTS H+-transporting ATPase (proton pump) signature 592 608 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme03g01691 955 PRINTS H+-transporting ATPase (proton pump) signature 623 648 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme03g01691 955 PRINTS H+-transporting ATPase (proton pump) signature 764 785 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme03g01691 955 PANTHER CALCIUM-TRANSPORTING ATPASE 5 935 - -
Cme03g01691 955 Gene3D - 136 220 - -
Cme03g01691 955 Gene3D - 330 629 IPR023214 -
Cme03g01691 955 SFLD C1.7: P-type atpase like 315 643 - -
Cme03g01691 955 PRINTS P-type cation-transporting ATPase superfamily signature 183 197 - -
Cme03g01691 955 PRINTS P-type cation-transporting ATPase superfamily signature 333 347 - -
Cme03g01691 955 PRINTS P-type cation-transporting ATPase superfamily signature 487 498 - -
Cme03g01691 955 PRINTS P-type cation-transporting ATPase superfamily signature 509 519 - -
Cme03g01691 955 PRINTS P-type cation-transporting ATPase superfamily signature 592 611 - -
Cme03g01691 955 PRINTS P-type cation-transporting ATPase superfamily signature 615 627 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01087 Cme-Chr2:15883040 Cme03g01691 Cme-Chr3:25617688 0 dispersed
Cme02g01583 Cme-Chr2:22885271 Cme03g01691 Cme-Chr3:25617688 0 dispersed
Cme02g01909 Cme-Chr2:25521866 Cme03g01691 Cme-Chr3:25617688 0 dispersed
Cme03g01691 Cme-Chr3:25617688 Cme05g01855 Cme-Chr5:27319766 0 dispersed
Cme04g00743 Cme-Chr4:8629215 Cme03g01691 Cme-Chr3:25617688 1.06E-27 transposed
Cme07g02040 Cme-Chr7:25358546 Cme03g01691 Cme-Chr3:25617688 0 transposed
Cme08g01961 Cme-Chr8:24343751 Cme03g01691 Cme-Chr3:25617688 5.82E-24 transposed
Cme11g00619 Cme-Chr11:7094695 Cme03g01691 Cme-Chr3:25617688 7.02E-12 transposed
Cme03g01691 Cme-Chr3:25617688 Cme04g00340 Cme-Chr4:2711497 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01691 K01535 - csv:101213505 1825.06