Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01702 ATGACGGCACCGGTGTCGGTTGATGGGAAAGGGAAGAAGAATATTGAGAATTTGGTGTCTGCTACTAGGTCATTGAAGGCTAGCTTAGAGAAATCTAGGACTCTAGGGTTTTCTTTGCAGAAAGCTGGGCCGAGATTGGAGGAGATTAGGCAAAGATTGCCGACTTTAGAAGCGGCGGTTCGGCCTATTCGTGCTGATAAGGAAGCCCTTGTTGCCGTCGGTGGCCATATAAATCGGGCTGTTGGCCCGGCCGCGGCGGTGCTCAAGGTTTTCGATGCAGTTCATGGCCTTGAAAAATCTCTATTATCGGACCCGCGGAATGATCTTCATGGGTATTTGTCTGTGTTGAAACGTATGGAAGAGGCATTGAGGTTTTTGGGAGATAACTGTGGACTGGCAATCCAGTGGTTGGAGGACATTGTTGAGTATTTGGAAGATAATACTGTGGCGGATGAGAAATATCTAGCGAGTTTGAAGAGTTCATTGAAAAATCTTAGGGATTTGCAGAGTGATGAAGGGAGGACTCGGCTTGATGGGGGACTTCTGAATGCTGCTTTAGATAAACTCGAGAACGAGTTTAGGCGGCTTTTAACGGAGCACAGTGTACCTCTTCCAATGTCTTCTTCGGCGTCTCCAGGTGAACAAGCTTGCATTGCTCCATCTCCGTTGCCTGTAACTATCATTCCAAAATTGCAAGCCATTCTTGGGAGATTGATTGCTAATAAACGACTTGAGAGTTGCATATCGATTTATGTTGAAGTTCGTAGTTCTAATGTTAGGGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATATCTGTTTCTGAGTTCAATGATGTGCTGAGCATCGAAGGGTACATTGCAAAATGGGGAAAGCATTTGGAGTTTGCAGTGAAACACTTGTTTGAGGCCGAGTTCAAGCTTTGTAATGACGTTTTCGAGAGGATTGGATTGGATGTTTGGATGGGGTGTTTTGCAAAGATAGCAACTCAAGCAGGTATTCTTGCATTTCTTCAATTTGGGAAAACTGTAACAGAAAGCAAGAATGATCCTATCAAGCTACTGAAGTTGTTAGATATATTTGCATCCTTGAACAAACTGAGACTAGACTTCAATAGGCTTTTTGGTGGGGCGGCCTGTTTGGAAATTCAAAACTTGACTAGGGATCTCATTAAGCGGGTTATTGATGGTGCGGCCGAGATTTTCTGGGAACTTCTAGTTCAGGTGGAGCTCCAGAGGCAAAATCCTCCGCCTTTAGATGGGGGAGTTCCACGATCGGTTAGCTTCATTATTGATTACAGTAACAAACTACTCTCTGACGATTATCGGCCGATCCTGACCCAGGCCCTCGTCATTCACCGGAGTTGGAAGAAAGAAAAGTTCCAAGAGGGTCTACTTGTCAGTGAGGTAACGAACCTTGTTAAAGCTATTGAGCATAATCTGGAAACTTGGATAAAGGCTTATGAAGATTCTACCTTGTCAAACTTTTTCGCTATGAACAATCATTGGCATCTATACAAGCACCTCAAAGGAACAAAAGTCGGAGAACTAATGGGAGATAAACTGAAGGAACATGAACAATACAAGGATTACTATGCTGCAGTTTTCTTGAGGGAGAGCTGGAGTAAACTTCCTAGCCATTTAAGCAGAGAGGGTTTGATTATGTTCTCGGGTGGCCGAGCTACTGCTCGTGATCTCGTCAAGAAACGTCTAAAGACATTCAACGAAGCTTTTGAAGACATGTATAAGAAGCAGTCAAACTGGGTTATGACTGACAAAGAGTTGAGGGAGAAGACATGTCAACTTATAGTTCAAACCATCGTGCCCGTTTATCGCAGTTACATGCAGAATTACGGCCCCTTGGTCGAGCAAGATCCGAGTTCCAGTAAGTATGTCAAGTACACCGTGCAGAATCTGGAGAAAATGTTATTGTCCCTATTTCAGCCAAAGCCACTTAGGTACAGTAGTCTTAAAGTTAGGCAGACCAGTGGGAAATTCAGCAATGGCGCAGCAGATCATCGTCGTTCCAACTCCATGGTTATGTAA 2049 44.17 MTAPVSVDGKGKKNIENLVSATRSLKASLEKSRTLGFSLQKAGPRLEEIRQRLPTLEAAVRPIRADKEALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLHGYLSVLKRMEEALRFLGDNCGLAIQWLEDIVEYLEDNTVADEKYLASLKSSLKNLRDLQSDEGRTRLDGGLLNAALDKLENEFRRLLTEHSVPLPMSSSASPGEQACIAPSPLPVTIIPKLQAILGRLIANKRLESCISIYVEVRSSNVRASLQALDLDYLEISVSEFNDVLSIEGYIAKWGKHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIATQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGAACLEIQNLTRDLIKRVIDGAAEIFWELLVQVELQRQNPPPLDGGVPRSVSFIIDYSNKLLSDDYRPILTQALVIHRSWKKEKFQEGLLVSEVTNLVKAIEHNLETWIKAYEDSTLSNFFAMNNHWHLYKHLKGTKVGELMGDKLKEHEQYKDYYAAVFLRESWSKLPSHLSREGLIMFSGGRATARDLVKKRLKTFNEAFEDMYKKQSNWVMTDKELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDPSSSKYVKYTVQNLEKMLLSLFQPKPLRYSSLKVRQTSGKFSNGAADHRRSNSMVM 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25682121 25685170 - MELO3C011181.2.1 Cme03g01702 323713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01702 682 Pfam Exo70 exocyst complex subunit 290 645 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cme03g01702 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 14 671 IPR004140 GO:0000145|GO:0006887
Cme03g01702 682 Gene3D Exocyst complex component Exo70 137 655 - -
Cme03g01702 682 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 14 671 - -
Cme03g01702 682 SUPERFAMILY Cullin repeat-like 87 648 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01702 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101207478 1338.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02744 Cme-Chr1:34624839 Cme03g01702 Cme-Chr3:25682121 0 dispersed
Cme03g01702 Cme-Chr3:25682121 Cme03g02110 Cme-Chr3:28354220 1.08E-70 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00165 . 14 651 EXO70 exocyst subunit family AT5G03540 77.1 5.7e-287 983.4
Cme08g01155 . 58 696 EXO70 exocyst subunit family AT5G03540 70.6 1.5e-263 905.6
Cme08g01155 . 58 696 EXO70 exocyst subunit family AT5G52340 79.7 1.3e-296 1015.4
Cme10g00165 . 16 651 EXO70 exocyst subunit family AT5G52340 74.2 9.3e-271 929.5
Cme08g01155 . 202 689 EXO70 exocyst subunit family AT5G52350 63.2 5.8e-174 607.8
Cme10g00165 . 151 651 EXO70 exocyst subunit family AT5G52350 60.6 1.2e-168 590.1
Cme12g00048 . 46 668 EXO70 exocyst subunit family AT5G58430 67.4 1.2e-246 849.4
Cme12g00048 . 46 667 EXO70 exocyst subunit family AT1G07000 53.0 2.2e-176 615.9
Cme07g01926 . 62 675 EXO70 exocyst subunit family AT5G13150 53.9 1.0e-171 600.5
Cme09g01028 . 99 710 EXO70 exocyst subunit family AT5G13990 54.2 5.2e-190 661.4
Cme04g01362 . 9 609 EXO70 exocyst subunit family AT1G72470 64.4 4.3e-215 744.6
Cme04g01362 . 9 607 EXO70 exocyst subunit family AT1G54090 62.2 2.2e-208 722.2
Cme04g01362 . 9 608 EXO70 exocyst subunit family AT3G14090 64.7 9.6e-220 760.0
Cme02g00990 . 13 651 EXO70 exocyst subunit family AT5G50380 62.6 3.3e-229 791.6
Cme12g01592 . 1 635 EXO70 exocyst subunit family AT5G50380 61.8 8.3e-225 776.9
Cme03g01702 . 13 682 EXO70 exocyst subunit family AT4G31540 73.2 4.2e-293 1003.8
Cme11g01259 . 33 598 EXO70 exocyst subunit family AT3G55150 50.3 3.1e-149 525.8
Cme04g02590 . 27 632 EXO70 exocyst subunit family AT3G09520 54.4 1.4e-178 623.2
Cme11g01259 . 16 598 EXO70 exocyst subunit family AT5G59730 50.8 1.4e-154 543.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005903 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39