Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01706 ATGGCAGGGCCTGATTACAAAGCCAATCAAGACAAGGATGATTTTCTGCAGCTTTTGGCAGCTCTTGGAGTTGATTTCCTTCTCTCTGGTGAAGAAAAGGTATCCCCAATATCATGTGCAGGGAAGATGATTTGCCTATTCTTTTCTGCAAACTGGTGTAGACCTTGTAGGACTTTCACTCCACAGTTGGTTCAACTCTACAACACTTTGCAAAAGAGAGGTGAAAAGCTAGAGATAATCTTCATCTCTTTGGACCATGACAAAAATGAATTTGAACAATACTTCAAGACTATGCCATGGCTTGCTGTGCCGTTGAACACCGAGTTGCAGAAACAGTTGTGCGGCAAGTACCATGTTGATTGCATTCCATCGTTTATTCCGCTTTGCGGAGATCATATTTTGAAAGAAGATGACTTGATTGGCTTCATTGAAGATTATGGTGCTGAAGTATTTCCTTTTACAAGGAAAAGGATGCAGGAACTTAAGGCCATGGATTGTGCCAAACGTGTAGAAGGAAGACTTGAAGAACTCTTTGGGAACAGAGGATATAACTATGTTATTTCTAGTCATGGAGGCAAGACACAAATATCTCAGCTAGTTGGAAAGACAATAGGCCTTTATTTTGGAGCATATTGGAGCCCTCCAAGTCGTTCCTTCACAGCCAAACTATCTAAAGTATACAAAGAAATCATGGACAAAACAGAGAATCATCACTCCTTAGAAGTAATCTTCGTCTCCACGGACCGAAACCTCGACGAATTCAAACTCAACATAATGGACATGCCATGGCTCGCTATCCCTTACGAGGATGAGACCCGGGGAGACCTCTACAGGATCTTCGACGTGAAGGCAATCCCAACACTAGTCCTGATCGGGGCAGATGGAAAGACGTCGAGTGAAAACGGAAGAGGCTTGGTTTGCTTGTATGGAGCAGAGGCATTCCCATTTACAGAAGAAAGAATATATGAGTTGGAAACAGCAGTGAAAAAGGAAGGAGAAGAATTGCCTTCAAATGTGGAGGATATAAAACACGAACATGTTCTTAAATTGGAGTTTGCAAAAGCCTATGTTTGTGATTTTTGCAAACTACAAGGAAGGTTTTGGGCATTTTCTTGTCATGTTTGTGATTATGATCTTCATCCAACTTGTGTTCAGCTCACAAATAATGTATAA 1173 41.43 MAGPDYKANQDKDDFLQLLAALGVDFLLSGEEKVSPISCAGKMICLFFSANWCRPCRTFTPQLVQLYNTLQKRGEKLEIIFISLDHDKNEFEQYFKTMPWLAVPLNTELQKQLCGKYHVDCIPSFIPLCGDHILKEDDLIGFIEDYGAEVFPFTRKRMQELKAMDCAKRVEGRLEELFGNRGYNYVISSHGGKTQISQLVGKTIGLYFGAYWSPPSRSFTAKLSKVYKEIMDKTENHHSLEVIFVSTDRNLDEFKLNIMDMPWLAIPYEDETRGDLYRIFDVKAIPTLVLIGADGKTSSENGRGLVCLYGAEAFPFTEERIYELETAVKKEGEELPSNVEDIKHEHVLKLEFAKAYVCDFCKLQGRFWAFSCHVCDYDLHPTCVQLTNNV 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25705404 25707408 - MELO3C011177.2.1 Cme03g01706 323717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01706 390 PANTHER THIOREDOXIN 3 388 - -
Cme03g01706 390 SUPERFAMILY Thioredoxin-like 186 297 IPR036249 -
Cme03g01706 390 Gene3D Glutaredoxin 21 157 - -
Cme03g01706 390 SUPERFAMILY Cysteine-rich domain 337 386 IPR046349 -
Cme03g01706 390 SUPERFAMILY Thioredoxin-like 30 145 IPR036249 -
Cme03g01706 390 Pfam Thioredoxin-like 41 126 IPR012336 -
Cme03g01706 390 Pfam Thioredoxin-like 201 296 IPR012336 -
Cme03g01706 390 PANTHER NUCLEOREDOXIN 3-RELATED 3 388 - -
Cme03g01706 390 ProSiteProfiles Thioredoxin domain profile. 1 169 IPR013766 -
Cme03g01706 390 Gene3D Glutaredoxin 179 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01706 K17609 NXN; nucleoredoxin [EC:1.8.1.8] - csv:101207967 784.252
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01706 Cme04g00320 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01706 Cme-Chr3:25705404 Cme09g00105 Cme-Chr9:799922 8.58E-65 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g245 . . . . . Bpe02g00227 . . . . Cma01g01585 . . . . . . Bhi04g01107 Tan02g2604 . . . . . . . . . . . . . . . . . . . Cme03g01706 . . . . . . . . . Cmo01g01633 . Cma09g00539 . . . . . . . . . . . . Cla08g01256 . . . . . . Lsi08g01117 Csa02g02310 . Cme04g00320
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010757 0 6 0 0 0 1 1 1 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 1 1 0 0 2 5 0 32