Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01708 ATGCCCAAACCTCCGCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCTTCAACCTCCCACCGCCCGCCTCCGCCGTCTTCACCCCCACCGAAACCCTCCTCCGATTCAAATCCTCTCTCACCAACACCCTCGCATTATCTAACTGGAACTCCTCCGCTCCTCTCTGTTCCGGCGACCGCCGCTTCTGGACCGGCCTAATCTGCAAAAACGGCCAACTGTACGGCATACGCCTCGAGAACATGAGTCTTGGCGGGACAGTCGACACCGCCGCTCTAGCCGGCCTCCCGACGTTAAGGACTCTGAGTCTGATGAACAATGGATTCGAAGGCCCAATGCCCGATGTGAAGCGAATTGGAGCGCTTAGGGCTTTGTATCTTTCGAATAATAACTTCTCGGGTTCGATTTCGGGAGATGCGTTTGAAGGAATGGGGAATTTGAAGAGATTGTATTTGAGTGGGAATGGATTCTCCGGCGAGATTCCGGGGTCGTTGGTGGAGTTGAAAGCGGTGGTGGAATTGGGATTGGAGGATAATCTGTTCGAAGGAAGAATACCGGATTTCGATGAACGGGTTTGGAAATATTTGAACTTTTCGGGGAATCGTTTGGATGGGCCGATTCCTTATGGATTGAGAAAAAATAGTAATTTCACTTCCTACCTTGGTAACAACGGGTTGTGTGGAGAGCCACTAGGACCATGCAAATCATCCACAAAAAAATGGTCCATTATCATCGGAGTACTCTCCGGCGCCGCCGCCTTAACCCTTTTTCTCCTTCTCCTCTACTGTTTTCTTCGCCCATCCAAATCCTCCGCCGCCGTACACGATGACACCAAAGCCAAAACCAAATTATTTCTCTCTCCGAAAATCCTTTTCAAAAGGCCGGAAAGGGCCCACCGATATTCCTCGACCGACTCGGACGAGAACTCGAATTTAAGTGGTCCGGCCGGGTCGGCTCTTTGCTTTGTGAGAAACGACCGGGTCCGGTTCGACTTCCAAGAACTTCTTGGGGCGTCGGCGGAAGTCCTTGGGAGTGGGAGCTTTGGGAAGTCTTACAAAGCGATGCTTTCAAATGGGTCGTCGGTGGTGGTGAAGAGATTCCGACAAATGAACGCTGCCGGAAAAGAGGAGTTTTACGGTCACATGCGGCGGCTTGGACGGCTGTCGCATCCAAATTTACTGCCACTTGTTGCGTTTTATTATGGGAAAGATGACAAGCTTTTGGTGTCTGACTTTGTTCCCAATGGCAGCTTGGCTAGTCACCTCCATGGGAGAAAATCAGAAGGAAATGCAAGGCTAAATTGGGGAAAAAGGCTAAAAATCATAAAAGGGGTAGCAAGAGGTCTTTCCTATCTCCACAAAGAGCTCCCAAATTTAAGTCTTCCACACGGCAATTTGAAATCCTCCAATGTCCTTCTCGACCATAATTTCTCTCCAATTTTATCCGACTATGCCCTTTTCCCTCTCCTCCAAAAATCCCACGCCCACACCCACATGGCCGCCTTCAAGTCGCCGGAGTTCTCCCCCTCCACCACCGACCGTACCTCCAAATCCACCGACGTCTGGAGCCTCGGAATCCTGATCCTCGAAACCCTTACCGGAAAGTTCCCCACCAACTATCTCCGCCAGGGCAAGGGCGCCGACTCCGATCTCGCCGCCTGGGTTGATGCTGTTGTTAGGGAAGAGTGGACGGCGGAGGTTTTCGACGGCGATCTGGTCGTCAGCGGCGGCGGAGGAAATGAGGAGGAGGGTTGTTGTGATTGGGATTGTAATGAAGATATGTTGAAGCTTTTGAAGATTGGGATGTGTTGTTGTGAGCGGGAGGTTGGGAAGAGATGGGGATTGAAACAAGCTGTTGAGAAAATTGAGGAATTGGATTTGAATGAAGAAGGTGAAGAGTATTATTCTTCTTATGGGAGTGATTATAATGGGAGTTTCGTTTCTAATTCTTCTAATTTCAAGGGAAGAAGAACAAGAAGGATGATTACTAATGAGGATGAGTCTTCCTTTTTGAGTTAG 2016 49.7 MPKPPLFFFFFFFFLLFNLPPPASAVFTPTETLLRFKSSLTNTLALSNWNSSAPLCSGDRRFWTGLICKNGQLYGIRLENMSLGGTVDTAALAGLPTLRTLSLMNNGFEGPMPDVKRIGALRALYLSNNNFSGSISGDAFEGMGNLKRLYLSGNGFSGEIPGSLVELKAVVELGLEDNLFEGRIPDFDERVWKYLNFSGNRLDGPIPYGLRKNSNFTSYLGNNGLCGEPLGPCKSSTKKWSIIIGVLSGAAALTLFLLLLYCFLRPSKSSAAVHDDTKAKTKLFLSPKILFKRPERAHRYSSTDSDENSNLSGPAGSALCFVRNDRVRFDFQELLGASAEVLGSGSFGKSYKAMLSNGSSVVVKRFRQMNAAGKEEFYGHMRRLGRLSHPNLLPLVAFYYGKDDKLLVSDFVPNGSLASHLHGRKSEGNARLNWGKRLKIIKGVARGLSYLHKELPNLSLPHGNLKSSNVLLDHNFSPILSDYALFPLLQKSHAHTHMAAFKSPEFSPSTTDRTSKSTDVWSLGILILETLTGKFPTNYLRQGKGADSDLAAWVDAVVREEWTAEVFDGDLVVSGGGGNEEEGCCDWDCNEDMLKLLKIGMCCCEREVGKRWGLKQAVEKIEELDLNEEGEEYYSSYGSDYNGSFVSNSSNFKGRRTRRMITNEDESSFLS 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25715727 25719526 - MELO3C011175.2.1 Cme03g01708 323719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01708 671 Pfam Leucine rich repeat 121 179 IPR001611 GO:0005515
Cme03g01708 671 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Cme03g01708 671 SUPERFAMILY Protein kinase-like (PK-like) 340 625 IPR011009 -
Cme03g01708 671 Gene3D Ribonuclease Inhibitor 140 237 IPR032675 -
Cme03g01708 671 Gene3D Phosphorylase Kinase; domain 1 305 411 - -
Cme03g01708 671 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 28 634 - -
Cme03g01708 671 SUPERFAMILY L domain-like 31 230 - -
Cme03g01708 671 Gene3D Transferase(Phosphotransferase) domain 1 412 636 - -
Cme03g01708 671 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
Cme03g01708 671 ProSiteProfiles Protein kinase domain profile. 336 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01708 671 PANTHER LRR RECEPTOR-LIKE KINASE 28 634 - -
Cme03g01708 671 Pfam Protein kinase domain 340 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01708 - - - csv:101214710 1209.9
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01708 Cme04g00319 CCT
Cme03g01708 Cme04g00319 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01708 Cme-Chr3:25715727 Cme07g00938 Cme-Chr7:9844632 8.92E-175 dispersed
Cme03g01708 Cme-Chr3:25715727 Cme04g00319 Cme-Chr4:2496731 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g244 . . . . . . . . . . . . . . . . . Bhi04g01111 . . . . . Lcy13g1363 . . . . . . . . . . Cone20ag0623 . . . Cme03g01708 . . . . Bpe14g00541 . . . . . . . . . . . . . . . . . . . Cla08g01254 . . . . . . Lsi08g01116 Csa02g02307 . Cme04g00319
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012527 0 1 0 0 1 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 0 1 0 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64758 PF00069 Pkinase 3.30E-27 CL0016 Cme PK