Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01712 ATGTACTTTGTTGATGAGATTTTCTCTCTGATCATATGCTATTATTTGCAGCAATTGGTGGTTAAGGCCGTTTCTCTTGCCATTGCCCGAGACGGTGCTAGTGGTGGTGTTGTCCGTACTGTTACTATAAATTCCGAGGGAGTGACAAGAAAATTCTATCCTGGCGATCAGCTACCGCTCTGGCACGAGGAATTAGAGCCTAAAAATTCGTTATTGGACGTGCTGAATGCTTCTAGTCCCGAACCCATGAACATATAA 258 43.8 MYFVDEIFSLIICYYLQQLVVKAVSLAIARDGASGGVVRTVTINSEGVTRKFYPGDQLPLWHEELEPKNSLLDVLNASSPEPMNI 85
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25735038 25735501 + MELO3C000704.2.1 Cme03g01712 323723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01712 85 PANTHER PROTEASOME SUBUNIT BETA 17 83 - -
Cme03g01712 85 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 14 64 IPR029055 -
Cme03g01712 85 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 17 83 - -
Cme03g01712 85 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 18 66 IPR029055 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01712 K02738 PSMB6; 20S proteasome subunit beta 1 [EC:3.4.25.1] - cmo:103504307 172.17
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g240 . . . . . . . . . Cmo12g00227 . . . . Sed08g1434 . . Bhi04g01115 Tan02g2596 Cmetu01g1445 . Hepe10g0330 . Lcy13g1369 . . . . . . . . . . Cone20ag0621 . . . Cme03g01712 . . Bda01g00957 . . . Bma01g01350 . . . . . Cma12g00273 . . . . . . . . . . . Cla08g01251 Cam08g1709 Cec08g1289 Cco08g1410 Clacu08g1406 . Cre08g1190 . Csa02g02304 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0046574 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1