Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01717 ATGAAGCGTAGCGCCTCCGAGTTGGATCTCGAAGAGTTCCTCAAAAAGGCCGCCGTCATCTCTAACAACGACGACGTTACCGACCCCGAAGACGACGTCTTCAAAATAGACGACCAACAAATCATAATTAGAAGCCCTAAACGAGGCAAGAACTTTCAAGAGTCCCCTGATGCCACCTACTTCTTCAGCGATATCGATTTCAGTTATTTCCTCGTCAAGAATAATCGGGAGATAATGGACGCAATTGTTAACTGTGGAAGTGGGCTGGCGGAGGCTCCTTTACGGTCACAGAATCTCACTCCTAAGCGTTCAAGCTTTTCACCCACTATAGATTCCCAATCTTCTATCGTGAGCAGCCCGATGGGCAGAGAACACCAAAGAGGACACAATAGTGGGTCCTCTGAGGATCAATCTGATGATGAAATTGAAGCTGGTTGTTGTGAACAAAGTACTGACCCTCTTGCTTTGAAGAGAATGAGAAGAATGATCTCTAACAGGGACTCAGCTAGAAGATCAAGAAGAAGAAAACAAGCTCATTTGGCCGAACTCGAGAACCAGGTAAAACAGTTGAAAGGCGAAAACGAAACCTTGTTCAACCAACTTCTAGATGCTAGTCAACAATATCGCGATGCTAATACAAACAACCGTGTACTTAAATCAGACGTTGACGCATTAAGAGCTAAGGTCAAATTGGCTGAAGATACATTAGCTAGAGGCTCAATGACATGCAGCTTGAATCAGCTGTTGCAGAGTCATTTGAGCACACCGCAGCCACTAACGGCACTCCGACGAATGTCGACATCACCACTCGGTTTTTCTGGAGACGAAGTTTCTTATTCTGGTGTGACAATGTCGGGGCAGAACCCGACGGCGGCGGGGATCCCGAACTCGGATATGCATATGAAAACTGGAATGGGTAGTGAGGCTGTTAGTTGTGTTTCTGGGATTTGGCCTAGAAATTAG 963 46.11 MKRSASELDLEEFLKKAAVISNNDDVTDPEDDVFKIDDQQIIIRSPKRGKNFQESPDATYFFSDIDFSYFLVKNNREIMDAIVNCGSGLAEAPLRSQNLTPKRSSFSPTIDSQSSIVSSPMGREHQRGHNSGSSEDQSDDEIEAGCCEQSTDPLALKRMRRMISNRDSARRSRRRKQAHLAELENQVKQLKGENETLFNQLLDASQQYRDANTNNRVLKSDVDALRAKVKLAEDTLARGSMTCSLNQLLQSHLSTPQPLTALRRMSTSPLGFSGDEVSYSGVTMSGQNPTAAGIPNSDMHMKTGMGSEAVSCVSGIWPRN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25770252 25773748 + MELO3C011167.2.1 Cme03g01717 323728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01717 320 SMART brlzneu 153 217 IPR004827 GO:0003700|GO:0006355
Cme03g01717 320 Pfam bZIP transcription factor 155 201 IPR004827 GO:0003700|GO:0006355
Cme03g01717 320 CDD bZIP_plant_GBF1 175 209 IPR045314 GO:0003700|GO:0006355
Cme03g01717 320 MobiDBLite consensus disorder prediction 99 142 - -
Cme03g01717 320 Coils Coil 166 235 - -
Cme03g01717 320 PANTHER BASIC LEUCINE ZIPPER 9 1 318 - -
Cme03g01717 320 MobiDBLite consensus disorder prediction 99 127 - -
Cme03g01717 320 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 160 175 IPR004827 GO:0003700|GO:0006355
Cme03g01717 320 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 155 218 IPR004827 GO:0003700|GO:0006355
Cme03g01717 320 Gene3D - 156 212 - -
Cme03g01717 320 SUPERFAMILY Leucine zipper domain 157 206 IPR046347 GO:0003700|GO:0006355
Cme03g01717 320 PANTHER BASIC LEUCINE ZIPPER 63 1 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01717 Cme-Chr3:25770252 Cme05g01780 Cme-Chr5:26780074 7.79E-26 dispersed
Cme03g01717 Cme-Chr3:25770252 Cme10g00324 Cme-Chr10:2130478 1.08E-10 transposed
Cme03g01717 Cme-Chr3:25770252 Cme07g01057 Cme-Chr7:12968801 6.09E-11 transposed
Cme03g01717 Cme-Chr3:25770252 Cme08g00670 Cme-Chr8:4377911 1.12E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41057 PF00170 bZIP_1 4.20E-14 CL0018 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01717 K25784 - csv:101210908 573.933