Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01722 ATGGCGGCGAATCAGAGAGAAGCTCGGCGGCGGCGGATTCTGGAGCGAGGTTCAGACCGCCTAGCCCTAATCACCGGTCAGATCCAGTCCCTCCCTTCCTCCTCTGCATCTCCACCGCCATACGATCAAAACACCGATTCATCATCCCAGCCCTTGATCTCTAATCTTCAGGATCTTCGGCCGCCTCCTAATTCCGATCAACCTACTGTTTCTCATGATAAGGACAAGACGGTTGGTTCTTCATTGCCACATAATGATCCTCAGATCAGTGTTAGATCTTCTACCTATGATGGAACCAGTACAGCGCCCCTCATGGGCAAATCTAATGAAATAGAATCTGCAGTAGCTTCTACTCCCGAAGACAGTGGAAGAGCACCGCCCTGTTTCTCCCCATCCGAAGGTCAAGATGCACCTCTTTCTACATTTGCCAGAGATCAACACTCCAAACCAAAGTTGCCACTTGTCAGTTCTTTCTCTATAAATGAACTAAGTTTGGCGATTTCTGAATCTGAGAAGACCCGTCTTTGTTTTTCAACTATTATAGCCTTTCTAGTAGTTGCTTCATGTGTAAAATTTCCCTTCTTAGGTCAGAGTGTTATGAGATTTCTTTTTGGATTTAGGCCACTCTATCTAGTATTGCTCACTAATGCAACAATTGTACTTGGTAGACTCCTTTTCACTAAACAAAAGGGTTTTAGAGTCAGTGATAGAAGAGACAGTCAAGTAAATCCACCTGAGGGACAAAGCTCAGTTGAACAAATTGGTAAGGTTTTAGAGGCAAGTCTAGTGGCTCAAAAGGCAATGGGCGCAATTTTGATGGACTGCAGTGTGTTCGCAGTTATCGTCGTATCAGGACTTTCATTGTTGCAGCGGCTTTAG 879 45.16 MAANQREARRRRILERGSDRLALITGQIQSLPSSSASPPPYDQNTDSSSQPLISNLQDLRPPPNSDQPTVSHDKDKTVGSSLPHNDPQISVRSSTYDGTSTAPLMGKSNEIESAVASTPEDSGRAPPCFSPSEGQDAPLSTFARDQHSKPKLPLVSSFSINELSLAISESEKTRLCFSTIIAFLVVASCVKFPFLGQSVMRFLFGFRPLYLVLLTNATIVLGRLLFTKQKGFRVSDRRDSQVNPPEGQSSVEQIGKVLEASLVAQKAMGAILMDCSVFAVIVVSGLSLLQRL 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25799228 25801143 + MELO3C011162.2.1 Cme03g01722 323733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01722 292 PANTHER TRANSMEMBRANE PROTEIN 1 288 - -
Cme03g01722 292 MobiDBLite consensus disorder prediction 28 68 - -
Cme03g01722 292 MobiDBLite consensus disorder prediction 28 137 - -
Cme03g01722 292 MobiDBLite consensus disorder prediction 81 116 - -
Cme03g01722 292 PANTHER TRANSMEMBRANE PROTEIN 1 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01722 - - - csv:101211157 478.018
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01722 Cme-Chr3:25799228 Cme04g01095 Cme-Chr4:14961785 1.36E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g179 . . . . Bpe02g01567 . . . . . . . . . . . . Bhi04g01135 . . . . . . . . . . . . . . . Cone17ag0954 Cone20ag0298 . . . Cme03g01722 . . Bda01g01354 . . Bpe04g00456 Bma01g00904 . . . . . . . Car05g00890 . . . . . . . . . Cla08g00979 Cam08g1428 Cec08g1006 Cco08g1129 Clacu08g1133 . Cre08g0917 Lsi08g00826 . Chy03g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011131 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 31