Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01726 ATGAGTACTTATCTACGGGAGTTGGAAGGAAAGTTATCAAATGACCCATTTTTTACAGAGAAGATGAACGGCGGCGGAGGAGTTGACGGCAGCGTTGGGATGAGGCGTGTTTGGATTCCGGGACCTGTTATAGTTGGTGCAGGGCCCTCGGGATTAGCTGCGGCGGCGTGTTTGAAACAAAGAGGAGTACCAAGTGTTATACTTGAGAGATCCAACTGTATTGGGTCGTTGTGGCAGTTAAAGACTTATGATCGTCTACGGTTACATCTACCGAAGCAATTTTGTGAGCTGCCGTTTATGGGTTTTCCGGTGGAATTTCCGACGTATCCTTCTAAGCAACAATTCGTGAAGTATTTGGAGGATTACGCTGAGAAATTTGATATACGGCCGAGATTCAACGAGACGGTTATAGAAGCAGAGTATGATCGTACCCTCGGGTTTTGGCGCGTGAAAAGCAAACGCGGTCGTTTTGAGGAAACAGAGTATGTCTCACGGTGGTTGATCGTAGCTACCGGAGAAAATGCGGAGGCGGTGGTGCCGGAGCTTGACGGAATGGATGTTTTTGGTGGTTCGATAAAACATACAAGTTTATATAGAAGCGGTGAAGAATTTCGTGGCAAGAAAGTTTTGGTTGTTGGCTGTGGAAATTCAGGCATGGAAGTCTGTTTGGATCTTTGTGAGCATAGTGCTACTCCTTATCTCGTCGTCAGAGATACAATTCTGTGGGTTAGTTTTGCAAATAAGGAAAAGAGGAGGGGTGGGGGTGAAATTGAAGAAGGGGATAAAATTGGAGGGGTTGGGATTGTTCACGTACTACCACGAGAGATGCTGGGAAGATCGACTTTCGGATTGTCCATGTGGTTGCTAAAGTGGTTTCCCATACGTCTTGTCGATGCGTTCTTGCTAATGGTGTCGAGGTTCATACTTGGGGATACTGCAAGATTCGGATTGGACCGGCCCATTATGGGCCCACTTCGTCTCAAAAACTCGTCCGGAAAGACCCCTGTCTTGGATGTTGGTACTCTTGCCAAAATCAGAAGTGGACATATTAAGGTACGCCCTAGCATCAAACGGCTGAAACGTCAAGCAGTGGAGTTTGTTGATGGAAAAACTGAAAGATTTGATTCCATAATATTGGCAACTGGTTATAGAAGCAATGTGCCCTCTTGGCTAAAGGAGGGCGAAATGTTTGGGAAAGAAGATGGGATGCCAAGGATGCCATTTCCAAAAGGATGGAAAGGAGAAAGTGGGCTATATGCAGTGGGATTCACAAAGCGTGGATTACTCGGCACATCAATGGATGCTAAAAGAATCGCCGAGGACATCGAACGGTGTTGGAAAGCCGATGCCAAGCTCTGTACTCCCACCATGCAATCTCCACCGTCCACGTAG 1392 46.77 MSTYLRELEGKLSNDPFFTEKMNGGGGVDGSVGMRRVWIPGPVIVGAGPSGLAAAACLKQRGVPSVILERSNCIGSLWQLKTYDRLRLHLPKQFCELPFMGFPVEFPTYPSKQQFVKYLEDYAEKFDIRPRFNETVIEAEYDRTLGFWRVKSKRGRFEETEYVSRWLIVATGENAEAVVPELDGMDVFGGSIKHTSLYRSGEEFRGKKVLVVGCGNSGMEVCLDLCEHSATPYLVVRDTILWVSFANKEKRRGGGEIEEGDKIGGVGIVHVLPREMLGRSTFGLSMWLLKWFPIRLVDAFLLMVSRFILGDTARFGLDRPIMGPLRLKNSSGKTPVLDVGTLAKIRSGHIKVRPSIKRLKRQAVEFVDGKTERFDSIILATGYRSNVPSWLKEGEMFGKEDGMPRMPFPKGWKGESGLYAVGFTKRGLLGTSMDAKRIAEDIERCWKADAKLCTPTMQSPPST 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25847150 25850980 + MELO3C011158.2.1 Cme03g01726 323737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01726 463 PRINTS Pyridine nucleotide disulphide reductase class-II signature 204 228 - -
Cme03g01726 463 PRINTS Pyridine nucleotide disulphide reductase class-II signature 41 63 - -
Cme03g01726 463 SUPERFAMILY FAD/NAD(P)-binding domain 207 447 IPR036188 -
Cme03g01726 463 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA6 31 454 - -
Cme03g01726 463 Pfam Pyridine nucleotide-disulphide oxidoreductase 43 239 - -
Cme03g01726 463 Gene3D - 42 272 IPR036188 -
Cme03g01726 463 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 31 454 - -
Cme03g01726 463 SUPERFAMILY FAD/NAD(P)-binding domain 43 247 IPR036188 -
Cme03g01726 463 PRINTS FAD-dependent pyridine nucleotide reductase signature 164 182 - -
Cme03g01726 463 PRINTS FAD-dependent pyridine nucleotide reductase signature 208 226 - -
Cme03g01726 463 PRINTS FAD-dependent pyridine nucleotide reductase signature 42 61 - -
Cme03g01726 463 Gene3D - 310 451 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01726 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - csv:101203913 853.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01353 Cme-Chr2:19587826 Cme03g01726 Cme-Chr3:25847150 0 dispersed
Cme03g01726 Cme-Chr3:25847150 Cme04g00923 Cme-Chr4:12360411 3.58E-178 dispersed
Cme03g01726 Cme-Chr3:25847150 Cme06g00434 Cme-Chr6:2738894 3.16E-180 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g339 . . . Bda03g00026 Bpe02g01196 . Bma04g00024 . Cmo05g00631 Cmo12g00219 . Cma05g00605 . Car12g00249 Sed01g1287 Cpe07g00228 . Bhi04g00822 Tan02g2580 Cmetu03g1256 . Hepe10g0344 . Lcy13g1389 . . . . . . . Cone4ag1539 Cone7ag1413 Cone17ag1107 Cone20ag0614 . . . Cme03g01726 Blo17g00055 Blo18g00069 . . Bpe14g00534 . Bma01g01332 Bma02g00070 . . . . Cma12g00265 . Car05g00547 Cpe11g00528 . . . . . . . . Cla08g01237 Cam08g1694 Cec08g1273 Cco08g1394 Clacu08g1391 . Cre08g1176 Lsi08g01100 . Chy03g01231 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000974 4 2 5 4 5 2 3 2 2 2 2 2 4 2 2 4 2 7 4 2 2 2 2 2 2 2 2 2 2 3 83