Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01728 ATACAACAACTAAAAAAGCCACTACTCGAAACCGAAACCCTACTCTCTGCTTTCTTCTTCCAGCCCGCGTTTTTTCTCATCTCAAAAAACTTTCTTACAATCATGGAGAATACTTCTCTCGATCAAGAAAAGGCTAAGAAAGTGCTTCGTCAGGTCGAGTTCTACTTCAGTGATAGTAATCTTCCTAGAGATGGTTTTCTTAGGAAAAGCATCAGTGAAAGCCCTGATGGAATGGTCGATCTGTCTTTAATCTGTACGTTTACTCGGATGAAAGGCCATCTTGAATTGAAACAAGATGTGACACCAGAAGACTTTCCAGAAGATACTCTGAAGGCTGTCGCTGAAACCCTAAGAACTTCTTCATCACTTAAAGTTTCTGAAGATGGGAAGAAGGTTGGTAGAGCTACTGAACTCCCAAAGCCTGAGGAGTTAATTGAACAATTGGATGATAGAACTGTAGCTGCATCACCATTTGAATATGATATCAAGCTTGAAGATGTAGAAGCTTTCTTTGATCGAGTTACAAAGGTTAATAGTGTGAGGCTGCCCCGTCATGTTGCAGATAAACGGGTATTCTGTGGAACTGCCTTGATAGAATTTTCTACTGAGGAAGATGCAGAAAAAGTTTTGAAGGAAAGCTTGGTTTATGCTGGCGCCAAGTTAGAATTGAAACCAAAGAGGGAATTTGATGAGGAGAGAGCAAAAGAGATGGAGAAGTTTGAAAGTTCACGCTCAACCTTAGGTGCCAACCGCAGCAACAATAATAGTTCCCCTGAATCAAGCTACCCTAAAGGCTTAATTGTTGCCTTTACATTGAAAAGCACGTCATCTGGAAATTCTGCAGAGGAAAACGAATCTCATGGTGTAGCTGCTGATAAGACTGAATGCAAAACAGATGAAGGACTAGAAGACTCCTCAAAGAATGACCCTGAGAAAACTGAGCAAATAGAGGAAACAAATTTGAGTAAAGATGAAGAAATTAAGAAAAGTGCTGATGATAAGAATGGAGAGGCTGAGGAGAAAAATGATACTGGCAATGAAAGAAGTCTTGAAGTGGAAGAACAGTGTATGGACGGTACTGTAGATGAACAAGAAGAGGCTGAAGAAAAACCCACAGCTCTTAAATCTAGGAACAATATGAATGTGGTTTCGCGTGAGGATTTGAAGGCTGTTTTTCAGAAGTTTGGAAGTGTTAAGTTCATTGATTTTAAGATTGGAGACGAGTCGGGCTATATAAGGTTTGAGGAGCCTGAAGCTGCCCAGAAAGCTCGTGCGTCTGCAGTACTAACCGAGCAAGGGGGACTGGCTGTGAAGAATTTTATAGCCACTTTAGAACCAGTGTCAGGTGAGGCTGAGAAGGAGTATTGGAGTCTACTCCGTAGCAACCAAGAGAAGCATCATCGCGACTTTAAGGGAAACCGTGGAAGGGGTGGCAAATTCAATCGAGGTGGTAAGCATGGACGGTCGAGGGGGCATGACAACCATCGAGGTCGCCCTAACAAAGCTCAAAAGGTTTAA 1518 42.16 IQQLKKPLLETETLLSAFFFQPAFFLISKNFLTIMENTSLDQEKAKKVLRQVEFYFSDSNLPRDGFLRKSISESPDGMVDLSLICTFTRMKGHLELKQDVTPEDFPEDTLKAVAETLRTSSSLKVSEDGKKVGRATELPKPEELIEQLDDRTVAASPFEYDIKLEDVEAFFDRVTKVNSVRLPRHVADKRVFCGTALIEFSTEEDAEKVLKESLVYAGAKLELKPKREFDEERAKEMEKFESSRSTLGANRSNNNSSPESSYPKGLIVAFTLKSTSSGNSAEENESHGVAADKTECKTDEGLEDSSKNDPEKTEQIEETNLSKDEEIKKSADDKNGEAEEKNDTGNERSLEVEEQCMDGTVDEQEEAEEKPTALKSRNNMNVVSREDLKAVFQKFGSVKFIDFKIGDESGYIRFEEPEAAQKARASAVLTEQGGLAVKNFIATLEPVSGEAEKEYWSLLRSNQEKHHRDFKGNRGRGGKFNRGGKHGRSRGHDNHRGRPNKAQKV 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25869808 25875695 + MELO3C011157.2.1 Cme03g01728 323739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01728 505 CDD LA_like_plant 45 134 - -
Cme03g01728 505 MobiDBLite consensus disorder prediction 229 262 - -
Cme03g01728 505 CDD RRM2_La_like 383 445 - -
Cme03g01728 505 Gene3D - 358 474 IPR012677 -
Cme03g01728 505 MobiDBLite consensus disorder prediction 478 495 - -
Cme03g01728 505 PANTHER OS02G0610400 PROTEIN 37 505 - -
Cme03g01728 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 151 236 IPR000504 GO:0003723
Cme03g01728 505 Pfam La domain 48 118 IPR006630 -
Cme03g01728 505 MobiDBLite consensus disorder prediction 462 505 - -
Cme03g01728 505 PRINTS Lupus La protein signature 77 92 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cme03g01728 505 PRINTS Lupus La protein signature 51 68 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cme03g01728 505 PRINTS Lupus La protein signature 192 210 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cme03g01728 505 MobiDBLite consensus disorder prediction 462 476 - -
Cme03g01728 505 ProSiteProfiles La-type HTH domain profile. 38 142 IPR006630 -
Cme03g01728 505 MobiDBLite consensus disorder prediction 243 262 - -
Cme03g01728 505 SUPERFAMILY RNA-binding domain, RBD 150 425 IPR035979 GO:0003676
Cme03g01728 505 CDD RRM1_La 152 224 - -
Cme03g01728 505 Gene3D - 36 139 IPR036388 -
Cme03g01728 505 SUPERFAMILY Winged helix DNA-binding domain 40 141 IPR036390 -
Cme03g01728 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 211 IPR000504 GO:0003723
Cme03g01728 505 Gene3D - 144 241 IPR012677 -
Cme03g01728 505 MobiDBLite consensus disorder prediction 277 378 - -
Cme03g01728 505 SMART rrm1_1 152 224 IPR000504 GO:0003723
Cme03g01728 505 SMART rrm1_1 378 438 IPR000504 GO:0003723
Cme03g01728 505 PANTHER LUPUS LA PROTEIN-RELATED 37 505 IPR045180 -
Cme03g01728 505 MobiDBLite consensus disorder prediction 286 355 - -
Cme03g01728 505 Pfam RNA binding motif 383 472 IPR014886 GO:0003723
Cme03g01728 505 ProSiteProfiles xRRM domain profile. 367 488 IPR014886 GO:0003723
Cme03g01728 505 SMART la 42 135 IPR006630 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01728 K11090 LA, SSB; lupus La protein - csv:101204162 827.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01728 Cme-Chr3:25869808 Cme08g00145 Cme-Chr8:1053659 1.12E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g328 . . . . . . . . Cmo05g00630 Cmo12g00218 . Cma05g00604 . Car12g00248 Sed01g1286 Cpe07g00227 . Bhi04g00824 Tan02g2579 Cmetu03g0669 . Hepe10g0345 . Lcy13g1390 . . . . . . . . . . . . . . Cme03g01728 . . . Bda13g01316 Bpe14g00532 . . Bma02g00072 . . . . Cma12g00264 . Car05g00546 Cpe11g00527 . . . . . . . . Cla08g01236 Cam08g1693 Cec08g1272 Cco08g1393 Clacu08g1390 . Cre08g1175 Lsi08g01099 . Chy03g01232 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009894 1 1 0 1 1 1 2 1 0 1 1 0 2 1 1 2 1 3 2 0 1 1 1 0 1 1 1 3 1 1 33