Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01738 ATGGCCAAAATTGCAATTGGAAGCATCGGCGAGGCCTACCAGCCCGATTGCATCCGAGCCCTCATCGTCGAGTTCATTGTCACTTTCCTTTTCGTCTTTGCTGGTGTCGGATCAGCCATGGCTGCCAATGCGTTATTGGCAAACGCACTTGTCGGTTTATTCGCCGTTGCAGTTGCTCATGCCTTTGTTGTGGCTGTGATGATCTCTACTGGCCACATTTCTGGTGGCCACCTCAACCCTGCTGTTACTCTTGGTCTACTTTTCGGTGGCCACATCACAGTCGTTCGATCCGCTCTATATTGGATTGTTCAGTTGCTAGCAGCTTCAGCTGCCAGCTTCTTGTTAACGTACCTCACCGGAGGCTTGGTCACTCCAATTCATACGTTAGCAAGTGGGGTTGGGTATCTTCAGGGAGTGATATGGGAGATTATTCTGACATTCTCCTTGCTTTTCACTGTGTATGGTACAATTGTTGACCCAAAAAAGGGGGCTCTTGATGGGCTGGGTCCATTGCTGACTGGGTTTGTGGTGGGGGCCAACATCTTGGCTGGTGGAGCTTTTTCAGGAGCTTCAATGAACCCAGCAAGATCATTTGGGCCTGCTTTGGTGGCTGGAGACTGGACTGACCATTGGGTTTACTGGGTTGGGCCTCTTATTGGTGGTGGGCTTGCTGGATTCATCTATGAAAACTTCCTCATTCAAAGATCTCATGTCCCTCTACCTAGGGAGGAAGATGGCTATTAG 744 49.87 MAKIAIGSIGEAYQPDCIRALIVEFIVTFLFVFAGVGSAMAANALLANALVGLFAVAVAHAFVVAVMISTGHISGGHLNPAVTLGLLFGGHITVVRSALYWIVQLLAASAASFLLTYLTGGLVTPIHTLASGVGYLQGVIWEIILTFSLLFTVYGTIVDPKKGALDGLGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFLIQRSHVPLPREEDGY 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25963205 25965078 + MELO3C011146.2.1 Cme03g01738 323749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01738 247 Pfam Major intrinsic protein 14 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01738 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Cme03g01738 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01738 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01738 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01738 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01738 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01738 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01738 247 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
Cme03g01738 247 PANTHER AQUAPORIN-8 2 245 IPR034294 -
Cme03g01738 247 SUPERFAMILY Aquaporin-like 12 241 IPR023271 -
Cme03g01738 247 PANTHER AQUAPORIN TIP4-1 2 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01738 Cme-Chr3:25963205 Cme09g01609 Cme-Chr9:20879919 2.21E-79 dispersed
Cme03g01738 Cme-Chr3:25963205 Cme08g01268 Cme-Chr8:9177803 1.03E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01738 K09873 - csv:101205380 441.039