Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01743 ATGAGTAGTAGTAAAGAACAGAGCCCTTCTCCGGAAACAGAGTCCTCTTCTTCATCTTCTTCCGATTCAAACAAAAAACCCAAAAGAATTAATTCCAATTCCAGTTCCAATTCAAAACACGCAGTTTACAGAGGAGTTCGAATGAGAAATTGGGGGAAATGGGTATCAGAAATTCGAGAACCAAGAAAGAAATCCCGCATTTGGTTAGGGACTTTCCCCAGCCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCCCTAAGCATCAAAGGAAATTCCGCCATTCTTAATTTCCCTGATCTTGTTCATCTTCTTCCTCGTCCTGTTTCTCTTGCTCCTCGTGATGTTCAAGCTGCTGCTGCTAAAGCTGCTCATATGCATAATCTTTCATCTAATGCTAATACTAACAACCATAATACTAATTCTAATTCCTCCTCTGCCTTTTCCGATGAACTTAGTGAGATTGTTGAGTTGCCGGCTCTGGGAACGAGTTACGACGGCGGAGTTGGTGTTGGTGGGGAGTTTGTGTTTGTTGAGTCGGAATTGGAATCAGCGGCTTGGCTTTACCAGCCACCGTGGGTGCAGAGCTTGCAGGAGGATTATGATGATATAGATGGAGATGGAGATTGTGGTAAGTTGGGAATGGGATTTGTTTCCAATGGATTTAAAGGGTTTCTGTTTGATTATTGA 690 43.33 MSSSKEQSPSPETESSSSSSSDSNKKPKRINSNSSSNSKHAVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSNANTNNHNTNSNSSSAFSDELSEIVELPALGTSYDGGVGVGGEFVFVESELESAAWLYQPPWVQSLQEDYDDIDGDGDCGKLGMGFVSNGFKGFLFDY 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25983034 25984087 + MELO3C011143.2.1 Cme03g01743 323754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01743 229 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Cme03g01743 229 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Cme03g01743 229 MobiDBLite consensus disorder prediction 1 41 - -
Cme03g01743 229 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Cme03g01743 229 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Cme03g01743 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 145 - -
Cme03g01743 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 149 225 - -
Cme03g01743 229 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Cme03g01743 229 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Cme03g01743 229 PANTHER DREB-LIKE PROTEIN 4 145 - -
Cme03g01743 229 PANTHER DREB-LIKE PROTEIN 149 225 - -
Cme03g01743 229 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Cme03g01743 229 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01743 Cme-Chr3:25983034 Cme05g01995 Cme-Chr5:28458946 1.88E-54 dispersed
Cme09g00060 Cme-Chr9:430858 Cme03g01743 Cme-Chr3:25983034 1.65E-28 dispersed
Cme03g01743 Cme-Chr3:25983034 Cme04g00177 Cme-Chr4:1321278 4.29E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41060 PF00847 AP2 1.40E-13 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01743 K09286 - csv:101206242 331.257