Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme03g01757 | ATGGAAGCTCCTGAATATTTCCAGATCAATGCCTACTCTTCCCAATTCTCTTCCCCCGACCACGCCGACGCCAGCACCACCGCCGCTGCTGCACCTGAGCATTTCATCGTCGAGGAGCTTCTTGATTTCTCCAACAACGAAGATGACGCTGTCTTTACTGACGCTGGTGGAGGAGGAGGAGGTGGAGGATTGTTTTACAACAACAATAATACTACTTCTAATGACCATAACAATAATAATAATTCAGCGGAATCTTCCGCCATTACCGTGATGGAGAGTTGCAATTCCTCTTCCTCCTTCTTTGAAGATATTAGTGGCTCTAATTTAGGCGATGCCCATTTCTCCAGCGAACTCTGCGTTCCGTATGACGATTTAGCTGAGCTGGAATGGCTTTCAAACTTTGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTAGAACTCCTCTCCGGAGTCAAAGTCAAATCCGATGAAATCCCCGCTCAATCTCCACAACCCACCGCCACTCGAACCGCAGCAGCAATTTTCAAACCGGAAATTGTTTCCGTTCCAGCCAAAGCTCGTAGCAAACGATCACGTGCCCTCCCATCTAATTGGAACAACTCCAGTCTCCTTCCTCTTTCTCCGACTGCCGAACCCGAAATTACTGCACCCATTGGACAACCATACTCCATCAAAAAACCTCTTCCCAAGGTCGCTGCTACAGCGAAGAAGAAGGACAATCCAGATGTAGGATTTTCATCCGGGGAGGGGCGTAAGTGCATGCACTGCGCTACCGACAAGACACCCCAGTGGCGGACTGGCCCAATGGGTCCAAAAACATTGTGTAATGCTTGTGGCGTTCGGTACAAATCCGGCCGTCTGGTACCGGAGTACCGACCCGCCGCAAGCCCCACCTTTGTTTTAACGAAGCACTCCAATTCTCACCGAAAAGTTTTGGAACTTCGACGACAAAAGGAGATTCTTAGAGCACAACAACAGCAACAACAACATTTGCTTTTGGATCATCGTCAGGATATGATCTTTGATGCATCCAATGGTGATGATTATCTCATTCATCAACACGTGGGTCCCGACTTTCGACAGATGATCTAA | 1098 | 48.09 | MEAPEYFQINAYSSQFSSPDHADASTTAAAAPEHFIVEELLDFSNNEDDAVFTDAGGGGGGGGLFYNNNNTTSNDHNNNNNSAESSAITVMESCNSSSSFFEDISGSNLGDAHFSSELCVPYDDLAELEWLSNFVEESFSSEDMQKLELLSGVKVKSDEIPAQSPQPTATRTAAAIFKPEIVSVPAKARSKRSRALPSNWNNSSLLPLSPTAEPEITAPIGQPYSIKKPLPKVAATAKKKDNPDVGFSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEILRAQQQQQQHLLLDHRQDMIFDASNGDDYLIHQHVGPDFRQMI | 365 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 26086792 | 26088622 | + | MELO3C011130.2.1 | Cme03g01757 | 323768 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme03g01757 | 365 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 365 | - | - | |
Cme03g01757 | 365 | CDD | ZnF_GATA | 254 | 301 | IPR000679 | GO:0006355|GO:0043565 | |
Cme03g01757 | 365 | Pfam | GATA zinc finger | 255 | 288 | IPR000679 | GO:0006355|GO:0043565 | |
Cme03g01757 | 365 | SMART | GATA_3 | 249 | 299 | IPR000679 | GO:0006355|GO:0043565 | |
Cme03g01757 | 365 | Gene3D | - | 248 | 299 | IPR013088 | GO:0006355|GO:0008270 | |
Cme03g01757 | 365 | ProSitePatterns | GATA-type zinc finger domain. | 255 | 280 | IPR000679 | GO:0006355|GO:0043565 | |
Cme03g01757 | 365 | ProSiteProfiles | GATA-type zinc finger domain profile. | 249 | 285 | IPR000679 | GO:0006355|GO:0043565 | |
Cme03g01757 | 365 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 365 | - | - | |
Cme03g01757 | 365 | PIRSF | Txn_fac_GATA_plant | 64 | 343 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Cme03g01757 | 365 | PIRSF | Txn_fac_GATA_plant | 14 | 56 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Cme03g01757 | 365 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 251 | 313 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme03g01757 | Cme04g00180 | CCT | |
Cme03g01757 | Cme04g00180 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g02907 | Cme-Chr1:35749345 | Cme03g01757 | Cme-Chr3:26086792 | 2.65E-86 | dispersed | |
Cme03g01273 | Cme-Chr3:22324166 | Cme03g01757 | Cme-Chr3:26086792 | 1.08E-06 | dispersed | |
Cme03g01757 | Cme-Chr3:26086792 | Cme04g00180 | Cme-Chr4:1341476 | 5.87E-117 | dispersed | |
Cme03g01757 | Cme-Chr3:26086792 | Cme04g01124 | Cme-Chr4:15303307 | 6.34E-91 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41062 | PF00320 | GATA | 1.90E-15 | CL0167 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme03g01757 | - | - | csv:101205219 | 590.112 |