Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01757 ATGGAAGCTCCTGAATATTTCCAGATCAATGCCTACTCTTCCCAATTCTCTTCCCCCGACCACGCCGACGCCAGCACCACCGCCGCTGCTGCACCTGAGCATTTCATCGTCGAGGAGCTTCTTGATTTCTCCAACAACGAAGATGACGCTGTCTTTACTGACGCTGGTGGAGGAGGAGGAGGTGGAGGATTGTTTTACAACAACAATAATACTACTTCTAATGACCATAACAATAATAATAATTCAGCGGAATCTTCCGCCATTACCGTGATGGAGAGTTGCAATTCCTCTTCCTCCTTCTTTGAAGATATTAGTGGCTCTAATTTAGGCGATGCCCATTTCTCCAGCGAACTCTGCGTTCCGTATGACGATTTAGCTGAGCTGGAATGGCTTTCAAACTTTGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTAGAACTCCTCTCCGGAGTCAAAGTCAAATCCGATGAAATCCCCGCTCAATCTCCACAACCCACCGCCACTCGAACCGCAGCAGCAATTTTCAAACCGGAAATTGTTTCCGTTCCAGCCAAAGCTCGTAGCAAACGATCACGTGCCCTCCCATCTAATTGGAACAACTCCAGTCTCCTTCCTCTTTCTCCGACTGCCGAACCCGAAATTACTGCACCCATTGGACAACCATACTCCATCAAAAAACCTCTTCCCAAGGTCGCTGCTACAGCGAAGAAGAAGGACAATCCAGATGTAGGATTTTCATCCGGGGAGGGGCGTAAGTGCATGCACTGCGCTACCGACAAGACACCCCAGTGGCGGACTGGCCCAATGGGTCCAAAAACATTGTGTAATGCTTGTGGCGTTCGGTACAAATCCGGCCGTCTGGTACCGGAGTACCGACCCGCCGCAAGCCCCACCTTTGTTTTAACGAAGCACTCCAATTCTCACCGAAAAGTTTTGGAACTTCGACGACAAAAGGAGATTCTTAGAGCACAACAACAGCAACAACAACATTTGCTTTTGGATCATCGTCAGGATATGATCTTTGATGCATCCAATGGTGATGATTATCTCATTCATCAACACGTGGGTCCCGACTTTCGACAGATGATCTAA 1098 48.09 MEAPEYFQINAYSSQFSSPDHADASTTAAAAPEHFIVEELLDFSNNEDDAVFTDAGGGGGGGGLFYNNNNTTSNDHNNNNNSAESSAITVMESCNSSSSFFEDISGSNLGDAHFSSELCVPYDDLAELEWLSNFVEESFSSEDMQKLELLSGVKVKSDEIPAQSPQPTATRTAAAIFKPEIVSVPAKARSKRSRALPSNWNNSSLLPLSPTAEPEITAPIGQPYSIKKPLPKVAATAKKKDNPDVGFSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEILRAQQQQQQHLLLDHRQDMIFDASNGDDYLIHQHVGPDFRQMI 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26086792 26088622 + MELO3C011130.2.1 Cme03g01757 323768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01757 365 PANTHER GATA TRANSCRIPTION FACTOR 1 365 - -
Cme03g01757 365 CDD ZnF_GATA 254 301 IPR000679 GO:0006355|GO:0043565
Cme03g01757 365 Pfam GATA zinc finger 255 288 IPR000679 GO:0006355|GO:0043565
Cme03g01757 365 SMART GATA_3 249 299 IPR000679 GO:0006355|GO:0043565
Cme03g01757 365 Gene3D - 248 299 IPR013088 GO:0006355|GO:0008270
Cme03g01757 365 ProSitePatterns GATA-type zinc finger domain. 255 280 IPR000679 GO:0006355|GO:0043565
Cme03g01757 365 ProSiteProfiles GATA-type zinc finger domain profile. 249 285 IPR000679 GO:0006355|GO:0043565
Cme03g01757 365 PANTHER GATA TRANSCRIPTION FACTOR 1 365 - -
Cme03g01757 365 PIRSF Txn_fac_GATA_plant 64 343 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cme03g01757 365 PIRSF Txn_fac_GATA_plant 14 56 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cme03g01757 365 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 251 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01757 - - - csv:101205219 590.112
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01757 Cme04g00180 CCT
Cme03g01757 Cme04g00180 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02907 Cme-Chr1:35749345 Cme03g01757 Cme-Chr3:26086792 2.65E-86 dispersed
Cme03g01273 Cme-Chr3:22324166 Cme03g01757 Cme-Chr3:26086792 1.08E-06 dispersed
Cme03g01757 Cme-Chr3:26086792 Cme04g00180 Cme-Chr4:1341476 5.87E-117 dispersed
Cme03g01757 Cme-Chr3:26086792 Cme04g01124 Cme-Chr4:15303307 6.34E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01757 CCT,ECH 92 365 C2C2-Gata Transcription Factor Family AT5G25830 52.3 3.4e-70 262.3
Cme07g01697 . 83 365 C2C2-Gata Transcription Factor Family AT5G66320 52.2 7.4e-65 244.6
Cme08g00904 . 104 262 C2C2-Gata Transcription Factor Family AT4G36240 52.3 5.8e-40 161.4
Cme03g01757 CCT,ECH 116 365 C2C2-Gata Transcription Factor Family AT4G32890 52.6 6.5e-60 228.0
Cme04g00035 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.7 3.0e-134 475.7
Cme06g02531 . 40 541 C2C2-Gata Transcription Factor Family AT4G17570 53.0 8.4e-129 457.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41062 PF00320 GATA 1.90E-15 CL0167 Cme TF