Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01757 ATGGAAGCTCCTGAATATTTCCAGATCAATGCCTACTCTTCCCAATTCTCTTCCCCCGACCACGCCGACGCCAGCACCACCGCCGCTGCTGCACCTGAGCATTTCATCGTCGAGGAGCTTCTTGATTTCTCCAACAACGAAGATGACGCTGTCTTTACTGACGCTGGTGGAGGAGGAGGAGGTGGAGGATTGTTTTACAACAACAATAATACTACTTCTAATGACCATAACAATAATAATAATTCAGCGGAATCTTCCGCCATTACCGTGATGGAGAGTTGCAATTCCTCTTCCTCCTTCTTTGAAGATATTAGTGGCTCTAATTTAGGCGATGCCCATTTCTCCAGCGAACTCTGCGTTCCGTATGACGATTTAGCTGAGCTGGAATGGCTTTCAAACTTTGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTAGAACTCCTCTCCGGAGTCAAAGTCAAATCCGATGAAATCCCCGCTCAATCTCCACAACCCACCGCCACTCGAACCGCAGCAGCAATTTTCAAACCGGAAATTGTTTCCGTTCCAGCCAAAGCTCGTAGCAAACGATCACGTGCCCTCCCATCTAATTGGAACAACTCCAGTCTCCTTCCTCTTTCTCCGACTGCCGAACCCGAAATTACTGCACCCATTGGACAACCATACTCCATCAAAAAACCTCTTCCCAAGGTCGCTGCTACAGCGAAGAAGAAGGACAATCCAGATGTAGGATTTTCATCCGGGGAGGGGCGTAAGTGCATGCACTGCGCTACCGACAAGACACCCCAGTGGCGGACTGGCCCAATGGGTCCAAAAACATTGTGTAATGCTTGTGGCGTTCGGTACAAATCCGGCCGTCTGGTACCGGAGTACCGACCCGCCGCAAGCCCCACCTTTGTTTTAACGAAGCACTCCAATTCTCACCGAAAAGTTTTGGAACTTCGACGACAAAAGGAGATTCTTAGAGCACAACAACAGCAACAACAACATTTGCTTTTGGATCATCGTCAGGATATGATCTTTGATGCATCCAATGGTGATGATTATCTCATTCATCAACACGTGGGTCCCGACTTTCGACAGATGATCTAA 1098 48.09 MEAPEYFQINAYSSQFSSPDHADASTTAAAAPEHFIVEELLDFSNNEDDAVFTDAGGGGGGGGLFYNNNNTTSNDHNNNNNSAESSAITVMESCNSSSSFFEDISGSNLGDAHFSSELCVPYDDLAELEWLSNFVEESFSSEDMQKLELLSGVKVKSDEIPAQSPQPTATRTAAAIFKPEIVSVPAKARSKRSRALPSNWNNSSLLPLSPTAEPEITAPIGQPYSIKKPLPKVAATAKKKDNPDVGFSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEILRAQQQQQQHLLLDHRQDMIFDASNGDDYLIHQHVGPDFRQMI 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26086792 26088622 + MELO3C011130.2.1 Cme03g01757 323768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01757 365 PANTHER GATA TRANSCRIPTION FACTOR 1 365 - -
Cme03g01757 365 CDD ZnF_GATA 254 301 IPR000679 GO:0006355|GO:0043565
Cme03g01757 365 Pfam GATA zinc finger 255 288 IPR000679 GO:0006355|GO:0043565
Cme03g01757 365 SMART GATA_3 249 299 IPR000679 GO:0006355|GO:0043565
Cme03g01757 365 Gene3D - 248 299 IPR013088 GO:0006355|GO:0008270
Cme03g01757 365 ProSitePatterns GATA-type zinc finger domain. 255 280 IPR000679 GO:0006355|GO:0043565
Cme03g01757 365 ProSiteProfiles GATA-type zinc finger domain profile. 249 285 IPR000679 GO:0006355|GO:0043565
Cme03g01757 365 PANTHER GATA TRANSCRIPTION FACTOR 1 365 - -
Cme03g01757 365 PIRSF Txn_fac_GATA_plant 64 343 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cme03g01757 365 PIRSF Txn_fac_GATA_plant 14 56 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cme03g01757 365 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 251 313 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01757 Cme04g00180 CCT
Cme03g01757 Cme04g00180 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02907 Cme-Chr1:35749345 Cme03g01757 Cme-Chr3:26086792 2.65E-86 dispersed
Cme03g01273 Cme-Chr3:22324166 Cme03g01757 Cme-Chr3:26086792 1.08E-06 dispersed
Cme03g01757 Cme-Chr3:26086792 Cme04g00180 Cme-Chr4:1341476 5.87E-117 dispersed
Cme03g01757 Cme-Chr3:26086792 Cme04g01124 Cme-Chr4:15303307 6.34E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41062 PF00320 GATA 1.90E-15 CL0167 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01757 - - csv:101205219 590.112