Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01761 ATGTCCAGAATTTCACTTCCATTTCTCACAACCCTACTTGTGTACCTCTTCTACTTCATCTACATACAATTCCATGCAAGTTCACAACCTGTCAATGTCGACCAGGCCATCTTGCTTGATCTCAAAGAACAATGGGGGAATCCATCCTCTCTTTGGTTATGGAATGCCTCGTCCTTGCCCTGTGATTGGCCGGAGATCATCTGTAGAGACGGCACAGTCATTGGAATCTCTCTGAGGAACAAGAATATCACTGGGAAAGTCCCAACTGTCATATGTAACCTGCAAAATCTCACTGTGCTTGATCTTTCATGGAACTATATCCCTGGTGAGTTCCCAGAAGTTTTATACAACTGTTCCAAGCTCAAATATCTTGATCTTTCAGGAAACTATTTTGTGGGTTCAATACCCCAAGATGTAGACCGGCTTCAAACTCTACAGTACATGGACCTTAGCGCAAACAACTTCTCGGGCGATTTTCCGGCAGCTCTAGGGAAATTGTCAGATTTGAGAACTTTAAAAATTTACAGAACTCAATGCAATGGCACATTGCCAGCTGAAATTGCCAACTTGTCTAATCTTGAAGTATTGAGCATGGCGTATAACACTTTGCTTGTCCCATCGCCAATACCAGAAGATTTCAGGAAACTGAAGAAGTTGAAATATATGTGGATGACAAAGTCCAATTTGATAGGTGAAATCCCAGAAAGCTTATCGGAACTTTTAAGCCTTGAACACTTGGATTTATCCAGTAACAACTTGATAGGTTCTATTCCTGCTGGGTTGTTCTCTTTGCAGAATTTAAACAACTTATTTCTCTACCAAAACCGATTGTCCGGAGAAATACCCAAGTCGATTCGAGCATCAAATTTACTCAATGTTGACCTCTCAGCGAACAATTTAAGCGGCACGATCCCTGAAGATTTTGGGAAGTTAAAAAAGTTGCAGGTCTTGAACTTGTTTGCAAATCACTTGTCTGGAGAGATTCCAGGAAGTCTAGGCCTCATACCTGAACTGAAAGGTTTTCGTGTATTCAACAACAGCCTAACTGGGGCCTTGCCACAAGAATTGGGTCTGCACTCAAATCTGGAAGCATTGGAGGTTTCAATGAATAAACTAAACGGTTCCTTGCCTGAACATCTCTGTAAAAATGGCGTCTTACAGGGAGTAGTTGCCTTTTCCAACAACCTTAGTGGCAAATTGCCGAAAGGGCTTGGCAATTGTAGGACTTTACGTACAGTCCAGCTTTCTAACAACAACTTTTCTGGTGAAATTCCTCCAGGTCTTTGGACTACTTTCAATCTATCAAGCATAATGTTAGATGGAAACTCATTCTCAGGTGAGTTACCAGATAGCTTGTCTTGGAATCTCTCGAGACTGGCAATAAATGACAACAAATTTTGGGGTCAAATTCCTCAAAATGTGTCAGCTTGGCGAAACTTGATTGTGTTTGAGGCAAGCAACAATCTGCTTTCTGGTAAGTTCCCTGATGGATTGGCAAGTCTTCCTCATCTTACCACACTTGTATTGAGTGGTAATCAACTCTCAGGCCAACTTCCAACGACAATTGGTTCGTGGGAATCATTGAATACTCTAAATCTCTCTAGAAATAAAATTTCAGGCCATATTCCTGCAGCTTTTGGTTCTCTTCCTAACCTCCTTTACCTGGATTTATCAGGTAATAACTTCACAGGTGAAATCCCACCTGAAATTGGCCACCTAAGACTTGCTTCCCTCAACTTGTCTTCCAACCAGCTTTCAGGGAAAATCCCAGATGAGTACGAGAATATAGCATATGGAAGAAGTTTCTTGAACAACCCCAAACTGTGTACTGCCATCGGTGTACTTGACCTCCCAAGCTGTTATTCTAGACAAAGAGATTCAAAATATCAGTCCTTTAAATATCTTTCCCTCATTCTAGTTCTCACCATTACCTTGCTCGTAATTGCTTTACTATGGATTATCATCCTATATAAAAGTTATTGCAAAAAGGATGAAAGATGCCACCCCGACACATGGAAGCTAACTTCATTCCAGAGATTGGAGTTCACAGAGACGAATATCTTGTCAAACTTGATAGAAACCAATCTGATTGGAAGTGGTGGATCCGGAAAAGTGTACTGCATAGACATCAACCATGCTGGTTATTATGTAGCTGTCAAAAGGATTTGGAGTAACAATAAGTTAGATAAAAAACTTGAGAAAGAATTTCAAGCAGAAGTTCAAATACTAGGCTCAATTCGGCATTCAAATATAGTGAAGCTGCTATGCTGCGTCTGGAATGAGAATTCAAAGCTTTTAGTCTATGAATACTTGGAAAATCAGAGCCTAGATAGGTGGCTTCATAAAAAGAAGAAAAGGTTAACAGCTGCTGCAATGAATTTTCTTGAGCAATCTGTCTTAGACTGGCCACGGAGGTTGCAGATTGCTATTGGAGCTGCACAGGGCCTCAGTTATATGCACCATGATTGCTCTCCACCAATCATTCATCGAGATGTGAAGTCAAGTAATATCTTATTAGACTGCGAGTTCCAGGCAAAGATAGCAGATTTTGGGTTGGCCAAGATGCTCGCCAGTCAGGGAGAGCCCCACACCATCTCTGCAATAGCAGGATCATTTGGCTACATAGCCCCAGTTGCAGAGTATGCCTACACCACGAAAGTAAACGAGAAGATTGATGTCTATAGCTATGGGGTTGTACTCCTGGAACTTACAACAGGAAGGGAACCTAACAGTGGAGATGAGCACACAAGCCTAGCAGAATGGGCATGGCAGCAATATAGTGAGGGAAAGCCTATTATTGAATCCCTTGATGAGGAAATAAAAAACCCATGCAATTTGGAAGAGATGACTACTATGTTCAAACTTGGTCTAATTTGTACGAGCATGTTACCTGAAATACGACCTTCGATGAAAGAAGTTCTGCGTATTCTACGCCAATGCAGTCCTCCAGAAGCTTGTGATAGGAGAAAGCATGCCATTGAATTTGATGCTATTCCCCTCCTCGGCACTACTCTATGA 3018 41.55 MSRISLPFLTTLLVYLFYFIYIQFHASSQPVNVDQAILLDLKEQWGNPSSLWLWNASSLPCDWPEIICRDGTVIGISLRNKNITGKVPTVICNLQNLTVLDLSWNYIPGEFPEVLYNCSKLKYLDLSGNYFVGSIPQDVDRLQTLQYMDLSANNFSGDFPAALGKLSDLRTLKIYRTQCNGTLPAEIANLSNLEVLSMAYNTLLVPSPIPEDFRKLKKLKYMWMTKSNLIGEIPESLSELLSLEHLDLSSNNLIGSIPAGLFSLQNLNNLFLYQNRLSGEIPKSIRASNLLNVDLSANNLSGTIPEDFGKLKKLQVLNLFANHLSGEIPGSLGLIPELKGFRVFNNSLTGALPQELGLHSNLEALEVSMNKLNGSLPEHLCKNGVLQGVVAFSNNLSGKLPKGLGNCRTLRTVQLSNNNFSGEIPPGLWTTFNLSSIMLDGNSFSGELPDSLSWNLSRLAINDNKFWGQIPQNVSAWRNLIVFEASNNLLSGKFPDGLASLPHLTTLVLSGNQLSGQLPTTIGSWESLNTLNLSRNKISGHIPAAFGSLPNLLYLDLSGNNFTGEIPPEIGHLRLASLNLSSNQLSGKIPDEYENIAYGRSFLNNPKLCTAIGVLDLPSCYSRQRDSKYQSFKYLSLILVLTITLLVIALLWIIILYKSYCKKDERCHPDTWKLTSFQRLEFTETNILSNLIETNLIGSGGSGKVYCIDINHAGYYVAVKRIWSNNKLDKKLEKEFQAEVQILGSIRHSNIVKLLCCVWNENSKLLVYEYLENQSLDRWLHKKKKRLTAAAMNFLEQSVLDWPRRLQIAIGAAQGLSYMHHDCSPPIIHRDVKSSNILLDCEFQAKIADFGLAKMLASQGEPHTISAIAGSFGYIAPVAEYAYTTKVNEKIDVYSYGVVLLELTTGREPNSGDEHTSLAEWAWQQYSEGKPIIESLDEEIKNPCNLEEMTTMFKLGLICTSMLPEIRPSMKEVLRILRQCSPPEACDRRKHAIEFDAIPLLGTTL 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26123660 26128171 + MELO3C011127.2.1 Cme03g01761 323772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01761 1005 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Cme03g01761 1005 Pfam Leucine Rich Repeat 242 261 IPR001611 GO:0005515
Cme03g01761 1005 SUPERFAMILY Protein kinase-like (PK-like) 682 977 IPR011009 -
Cme03g01761 1005 Gene3D Transferase(Phosphotransferase) domain 1 771 996 - -
Cme03g01761 1005 ProSiteProfiles Protein kinase domain profile. 691 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01761 1005 SUPERFAMILY L domain-like 42 381 - -
Cme03g01761 1005 SUPERFAMILY RNI-like 288 621 - -
Cme03g01761 1005 SMART serkin_6 691 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01761 1005 Pfam Protein kinase domain 694 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01761 1005 Gene3D Ribonuclease Inhibitor 178 288 IPR032675 -
Cme03g01761 1005 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 14 995 - -
Cme03g01761 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Cme03g01761 1005 Gene3D Ribonuclease Inhibitor 30 177 IPR032675 -
Cme03g01761 1005 SMART LRR_typ_2 549 573 IPR003591 -
Cme03g01761 1005 SMART LRR_typ_2 311 334 IPR003591 -
Cme03g01761 1005 SMART LRR_typ_2 190 215 IPR003591 -
Cme03g01761 1005 SMART LRR_typ_2 94 118 IPR003591 -
Cme03g01761 1005 SMART LRR_typ_2 240 264 IPR003591 -
Cme03g01761 1005 SMART LRR_typ_2 501 525 IPR003591 -
Cme03g01761 1005 CDD STKc_IRAK 697 977 - -
Cme03g01761 1005 Pfam Leucine rich repeat 77 130 IPR001611 GO:0005515
Cme03g01761 1005 Pfam Leucine rich repeat 455 514 IPR001611 GO:0005515
Cme03g01761 1005 Pfam Leucine rich repeat 527 585 IPR001611 GO:0005515
Cme03g01761 1005 Gene3D Phosphorylase Kinase; domain 1 659 770 - -
Cme03g01761 1005 ProSiteProfiles Leucine-rich repeat profile. 242 265 IPR001611 GO:0005515
Cme03g01761 1005 Gene3D Ribonuclease Inhibitor 335 622 IPR032675 -
Cme03g01761 1005 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 14 995 - -
Cme03g01761 1005 Gene3D Ribonuclease Inhibitor 289 334 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00184 Cme-Chr2:1438086 Cme03g01761 Cme-Chr3:26123660 4.58E-26 dispersed
Cme02g00185 Cme-Chr2:1443816 Cme03g01761 Cme-Chr3:26123660 0 dispersed
Cme03g01761 Cme-Chr3:26123660 Cme06g01720 Cme-Chr6:19446849 0 dispersed
Cme03g01761 Cme-Chr3:26123660 Cme12g01317 Cme-Chr12:21222820 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64761 PF00069 Pkinase 1.30E-43 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01761 K00924 - csv:101219431 1877.83