Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01772 ATGGCTTTTCACTCAGCTTTCTTTCTTCTTTTGTTCTTCACTACTTTCTCCATTTCTTCTTCTCAAGCTCTTACTTCTGCTATCACCAACCAGCCTCAGTTCTTCAATCTTATACAAAAGACCGCCTCAGGAGAGTTCCTGTCTGAATGGGATCTTTCAGGAGGAAAATCCTTCTGCAACTTCACGGGAATTCGGTGCAATGACCAAGGACATGTCGTCGAGATTGATATCTCTGGCCAGTCTCTCTCTGGGAGCTTTCCAGAAGATGTATGCTCTTACCTGCCAAAGCTTAGAGTTCTTCGTCTTGCTGGTACCGGTTTTTACGGACGTTTTCCTTCAGGAATCACCAACTGTTCTCTTATTGAAGAACTTAACTTGAGCTCTTTGTATCTCAATGGAACTATCCCGGACTTATCACAAATGAAACAGCTGCGTGTACTTGACCTCTCGTACAATTCCTTTACTGGTGATTTTCCCATGTCAGTTTTCGACCTTGTTAATCTTGAGGTGCTGAATTTCAATGAGAATTACAACCTCAACTTATGGAAGTTGCCTGACAAGATTTCCAGTCTGACAAAGCTAAAATCTATGGTTTTGACAACCTGTATGTTAGATGGAGAAATCCCACGATCGATAGGGAACATGACGTCTCTTGTTGATCTTGAACTAAGTGGGAACTTTCTCAAGGGAGAGATTCCAAAAGAAATCTCCTTGTTGAAGAACTTGCAACAACTTGAACTCTATTACAATGAACTCACAGGAAACATACCAGAGGGGCTTGGAAATTTAACGGAGCTGGTGGACATGGACATGTCAGTGAACCTTTTGACAGGAGAGCTTCCAGAATCCATTTGTAAGCTCCCTAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTCACAGGAGAGATCCCAAATGTGCTAGCCAACTCAACAACACTCACTATGCTATCACTTTATGACAATTTTCTTACTGGACAGATTCCTCAAGAGTTAGGGAAGTTCTCACCAATGGTTGTCCTTGACTTGTCAGAAAATCGCCTGTCTGGGCCATTGCCATTGGATATATGCAGAGGAGGGAAATTGCTATACTTTCTTGTCCTGCTAAATAGCCTTTCTGGAGAAATACCCTCAAGCTTTGCTGAATGTGTTTCACTTTTAAGGTTTAGGATTAGTTTCAATCAGTTGACGGGAACAATTCCTGAAGGAGTTTTGGGTCTACCCCATGTTTCAATTATTGATGTTGCTCAAAATAAGCTCACTGGTTCCATTTCAAATTCTATCTCACAAGCAAGAAACTTGTCAGAGTTGTTCTTACAAGGAAACAGGATTTCTGGAGTTATACCACCAGAGATTTCAGGAGCAGCCAATCTGGTGAAGCTTGATCTTAGCAACAATCTTCTCTCCGGTCCAGTCCCATCACAGATTGGCAATCTGATTAAACTAAATCAGGTAATGTTACAAGGAAACCAACTGAATTCTTCAATCCCCACTTCATTCGCATCTTTAAAGTCTCTCAACGTTCTTGATCTCTCGAACAATCGTTTAACCGGGAAAATTCCAGAAAATTTGAGTGAATTGTTCCCAAGTTCTTTCAATTTTTCGAACAATCAACTTTCGGGTCCAATTCCTTTGTCTTTAATCAAACAAGGGTTAGCAGATAGCTTTTTTGGCAACCCAAATCTATGTGTTCCACCGGCGTATTTCATTTCACCAGATCAAAAATTCCCCATGTGTTCACATTTTTCCTTTAGAAAACGTCTAAATTTCATCTGGGGTATCGTCATTCCATTGATCATCTTCTTCACCTGCGCCGTCCTGTTTCTAAAACGACGAATCACGATAAGAAGAACATCAGAGATCAAAAACGAAGAAACCCTTTCTTCTTCTTTCTTCCATTTACAGAGTTTCGACCAAAGCATGATTCTCGAAGCCATGGTGGAAAAGAACATTGTGGGTCACGGCGGATCAGGAACAGTTTACAAAATCGAGCTCGGAAATGGAGAAATCTTCGCCGTGAAGAGGCTATGGAATCGAAGAGCAAAACATCTCTTCGATAAAGAATTGAAAACAGAGGTCGAAACCCTAGGAACAATACGGCATAAGAACATCGTGAAACTCTATAGCTATTTTTCAGGTTTAAATTGCAGCCTTCTTGTTTACGAATACATGCCAAACGGAAATCTATGGGACGCCCTTCATAAAGGGTGGATTCATCTTGATTGGCCAACGCGCCATCGCATCGCGGTGGGAATCGCACAAGGTCTCGCTTATCTCCACCACGACCTCTCGCCGCCGGTAATTCACAGAGATATCAAAACCACAAACATTCTATTAGATGCAAATTGCCAACCCAAAGTTGCAGATTTCGGGATCGCTAAAGTCCTACAAGGAACTAAGGATTCAACGAACTCTGTAATCGCAGGGACATACGGCTATTTAGCTCCTGAATACGCATATTCATCAAAGGCCACAACCAAGTGCGATGTGTACAGCTTTGGAGTAGTGTTAATGGAGTTGATAACAGGGAAGAAGCCGATTGAAACCGAGTATGGAGAAAACAAGAACATTGTGTTCTGGGTTTCGAACAAAGTGGATACAAAAGAAGGGGTTCTTGAGATTCTTGACAATAAATTAAAAGGGTTGTTTAGGGATGACATAATTAAGGCTCTGAGAATCGCCATTCGCTGTACTTACAAGAATCCAGTGCTTCGACCCGCCATGGGAGAGGTGGTTCAGCTTCTGCAAGAGGTGGATCCTTGCAAATTTGACCGTCCCTTCGAAGATGTTGAAAAAGGAGAAGATACGTGTATGATGTCACTAAAATAA 2829 41.68 MAFHSAFFLLLFFTTFSISSSQALTSAITNQPQFFNLIQKTASGEFLSEWDLSGGKSFCNFTGIRCNDQGHVVEIDISGQSLSGSFPEDVCSYLPKLRVLRLAGTGFYGRFPSGITNCSLIEELNLSSLYLNGTIPDLSQMKQLRVLDLSYNSFTGDFPMSVFDLVNLEVLNFNENYNLNLWKLPDKISSLTKLKSMVLTTCMLDGEIPRSIGNMTSLVDLELSGNFLKGEIPKEISLLKNLQQLELYYNELTGNIPEGLGNLTELVDMDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPNVLANSTTLTMLSLYDNFLTGQIPQELGKFSPMVVLDLSENRLSGPLPLDICRGGKLLYFLVLLNSLSGEIPSSFAECVSLLRFRISFNQLTGTIPEGVLGLPHVSIIDVAQNKLTGSISNSISQARNLSELFLQGNRISGVIPPEISGAANLVKLDLSNNLLSGPVPSQIGNLIKLNQVMLQGNQLNSSIPTSFASLKSLNVLDLSNNRLTGKIPENLSELFPSSFNFSNNQLSGPIPLSLIKQGLADSFFGNPNLCVPPAYFISPDQKFPMCSHFSFRKRLNFIWGIVIPLIIFFTCAVLFLKRRITIRRTSEIKNEETLSSSFFHLQSFDQSMILEAMVEKNIVGHGGSGTVYKIELGNGEIFAVKRLWNRRAKHLFDKELKTEVETLGTIRHKNIVKLYSYFSGLNCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHRIAVGIAQGLAYLHHDLSPPVIHRDIKTTNILLDANCQPKVADFGIAKVLQGTKDSTNSVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGKKPIETEYGENKNIVFWVSNKVDTKEGVLEILDNKLKGLFRDDIIKALRIAIRCTYKNPVLRPAMGEVVQLLQEVDPCKFDRPFEDVEKGEDTCMMSLK 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26199097 26202542 - MELO3C011117.2.1 Cme03g01772 323783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01772 942 PRINTS Leucine-rich repeat signature 503 516 - -
Cme03g01772 942 PRINTS Leucine-rich repeat signature 458 471 - -
Cme03g01772 942 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 927 - -
Cme03g01772 942 ProSiteProfiles Leucine-rich repeat profile. 505 528 IPR001611 GO:0005515
Cme03g01772 942 Pfam Leucine rich repeat 457 516 IPR001611 GO:0005515
Cme03g01772 942 SUPERFAMILY Protein kinase-like (PK-like) 625 915 IPR011009 -
Cme03g01772 942 SMART LRR_typ_2 503 527 IPR003591 -
Cme03g01772 942 SMART LRR_typ_2 239 263 IPR003591 -
Cme03g01772 942 SMART LRR_typ_2 287 310 IPR003591 -
Cme03g01772 942 SMART LRR_typ_2 432 455 IPR003591 -
Cme03g01772 942 SMART LRR_typ_2 479 502 IPR003591 -
Cme03g01772 942 SMART LRR_typ_2 165 191 IPR003591 -
Cme03g01772 942 ProSitePatterns Protein kinases ATP-binding region signature. 652 674 IPR017441 GO:0005524
Cme03g01772 942 SMART serkin_6 646 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01772 942 Gene3D Transferase(Phosphotransferase) domain 1 724 928 - -
Cme03g01772 942 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 1 927 - -
Cme03g01772 942 ProSiteProfiles Protein kinase domain profile. 646 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01772 942 SUPERFAMILY L domain-like 264 572 - -
Cme03g01772 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Cme03g01772 942 Gene3D Ribonuclease Inhibitor 33 180 IPR032675 -
Cme03g01772 942 Pfam Protein kinase domain 648 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01772 942 Gene3D Ribonuclease Inhibitor 274 575 IPR032675 -
Cme03g01772 942 Gene3D Ribonuclease Inhibitor 181 273 IPR032675 -
Cme03g01772 942 SUPERFAMILY RNI-like 71 350 - -
Cme03g01772 942 Gene3D Phosphorylase Kinase; domain 1 631 723 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01772 Cme04g00205 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01772 Cme-Chr3:26199097 Cme04g00206 Cme-Chr4:1518847 0 dispersed
Cme02g00428 Cme-Chr2:3540743 Cme03g01772 Cme-Chr3:26199097 2.30E-10 transposed
Cme12g01285 Cme-Chr12:20912151 Cme03g01772 Cme-Chr3:26199097 5.98E-06 transposed
Cme03g01099 Cme-Chr3:20415691 Cme03g01772 Cme-Chr3:26199097 0 transposed
Cme03g01772 Cme-Chr3:26199097 Cme04g00205 Cme-Chr4:1506131 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64762 PF00069 Pkinase 1.40E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01772 - - csv:101220145 1776.53