Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01774 ATGGCGGTGCCGGAGTCGTCTGAGGGCCACCGTACGGCTTCTCGGCGAGCAAATCGACCGCTTGTCGGACCTAGGGTTCCACTGAGACGGTTACTAAGAGTCGCATCTGTCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTTTCTCTTCTCACTCCTTATATTCAAGAGCTTGGTATTCCTCACGCTTGGTCTAGTCTCATATGGCTCTGTGGACCGATTTCTGGTCTCTTTGTTCAACCGCTCGTTGGTCATATGAGCGATCACTGCACCAGCCGATACGGTCGTCGGAGGCCGTTCATCGTCGCTGGAGCGCTTTCTATAGTACTCGCTGTTTTGATTATTGGCCACTCTGCAGACCTCGGTTGGTGGATTGGTGACAGAGGTGATGTTAGACCTCGTGCGATTGTATTCTTTGTGATTGGCTTCTGGATTCTCGATGTAGCTAACAACGTTTCCCAAGGTCCTTGTAGAGCTCTGCTTGCTGATCTTACCGGAAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATTGCTGTTGGCAATATTTTTGGATATGCAACTGGATCTGTTAGTGGCTGGTACAAGATCTTCCCATTTACTCTCACCTCTGCATGTTCTGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATCGTGTTCATTGCAATTACAACATATTTGAGTGTATCAGCAGCTCAAGAGATACCTCTAGTTTCAAACGGTAGGCCCTCCCTGGTTTTAGAAGAAAGTATGGGGGAGTCAGGTCATGCTTCAGAAGCATTTTTCTGGGACTTGTTTCACACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGATAGCATGGTTTCCATTTATTCTCTTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGACTTATAGTTTGGGAGTCAGAATGGGAGCATTTGGTCTGACGTGTAACTCTGTTGTCCTCGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTCATATGGGGAATCTCTAATATTTTCATGGCTATATGTTTTCTTACTATCCTGGTTGTTACGTATGTGGCAAACAATATGGGCTATATAGGTCATGATCTCCCACCAAAGAGTATTTTATCAGCAGCATTGATTATCTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTATAGTGTTCCATATGCCATGATCTCCTCACGCGTTGAATCTTTACAACTTGGTCAAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCTTTTGCAAGTGGACTCATTGCCATCTTGGCTCTTCCTCGGTCTGGTGCTCAGAACCCCAGAAACCTCACATGAGAGAGTTCTGGTGTTTGATACTTACCCTTCACCTACATCAACTGATAGAGCCAAAGACACATGGGATCTGA 1539 45.48 MAVPESSEGHRTASRRANRPLVGPRVPLRRLLRVASVACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPISGLFVQPLVGHMSDHCTSRYGRRRPFIVAGALSIVLAVLIIGHSADLGWWIGDRGDVRPRAIVFFVIGFWILDVANNVSQGPCRALLADLTGKDHRRNRVANAYFSLFIAVGNIFGYATGSVSGWYKIFPFTLTSACSVNCANLKSAFLIDIVFIAITTYLSVSAAQEIPLVSNGRPSLVLEESMGESGHASEAFFWDLFHTFRHFSGYIWVILLVTSLTWIAWFPFILFDTDWMGREIYGGKPNEGQTYSLGVRMGAFGLTCNSVVLGITSLLMEKLCRKWGAGFIWGISNIFMAICFLTILVVTYVANNMGYIGHDLPPKSILSAALIIFALLGAPLAITYSVPYAMISSRVESLQLGQGCGVPGKWTMGSAVWWWKLSSFCCGSTCSFCKWTHCHLGSSSVWCSEPQKPHMREFWCLILTLHLHQLIEPKTHGI 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26210062 26218818 + MELO3C011115.2.1 Cme03g01774 323785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01774 512 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 10 439 - -
Cme03g01774 512 Pfam MFS/sugar transport protein 44 180 - -
Cme03g01774 512 SUPERFAMILY MFS general substrate transporter 29 440 IPR036259 -
Cme03g01774 512 TIGRFAM GPH_sucrose: sucrose/H+ symporter 26 438 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cme03g01774 512 CDD MFS_SLC45_SUC 31 437 - -
Cme03g01774 512 Gene3D MFS general substrate transporter like domains 28 467 IPR036259 -
Cme03g01774 512 PANTHER SUGAR TRANSPORTER 10 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01774 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101220384 824.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01774 Cme-Chr3:26210062 Cme09g00738 Cme-Chr9:8711282 1.85E-124 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01774 . 28 437 Sucrose Transporter Gene Family AT1G22710 50.2 5.6e-117 418.3
Cme05g00917 . 2 349 Sucrose Transporter Gene Family AT1G22710 57.6 1.0e-113 407.5
Cme03g01774 . 21 437 Sucrose Transporter Gene Family AT2G14670 50.5 7.1e-117 417.9
Cme05g00917 . 2 334 Sucrose Transporter Gene Family AT2G14670 58.8 8.4e-110 394.4
Cme03g01774 . 21 420 Sucrose Transporter Gene Family AT1G66570 50.4 3.7e-112 402.1
Cme05g00917 . 2 264 Sucrose Transporter Gene Family AT1G66570 55.1 1.8e-82 303.5
Cme09g00738 . 154 606 Sucrose Transporter Gene Family AT2G02860 70.9 6.1e-187 650.6
Cme05g00917 . 2 334 Sucrose Transporter Gene Family AT5G06170 55.5 1.0e-99 360.9
Cme05g00917 . 2 334 Sucrose Transporter Gene Family AT5G43610 58.8 2.4e-109 392.9
Cme03g01774 . 14 437 Sucrose Transporter Gene Family AT1G09960 70.6 2.2e-177 619.0
Cme05g00917 . 2 346 Sucrose Transporter Gene Family AT1G71880 57.7 2.8e-108 389.4
Cme05g00917 . 2 349 Sucrose Transporter Gene Family AT1G71890 55.4 5.0e-105 378.6
Cme05g00917 . 2 346 Sucrose Transporter Gene Family AT1G71880 57.7 2.8e-108 389.4
Cme03g01774 . 28 437 Sucrose Transporter Gene Family AT1G22710 50.2 5.6e-117 418.3
Cme05g00917 . 2 349 Sucrose Transporter Gene Family AT1G22710 57.6 1.0e-113 407.5
Cme09g00738 . 154 606 Sucrose Transporter Gene Family AT2G02860 70.9 6.1e-187 650.6
Cme03g01774 . 14 437 Sucrose Transporter Gene Family AT1G09960 70.6 2.2e-177 619.0
Cme05g00917 . 2 349 Sucrose Transporter Gene Family AT1G71890 55.4 5.0e-105 378.6
Cme05g00917 . 2 334 Sucrose Transporter Gene Family AT5G43610 58.8 2.4e-109 392.9
Cme03g01774 . 21 420 Sucrose Transporter Gene Family AT1G66570 50.4 3.7e-112 402.1
Cme05g00917 . 2 264 Sucrose Transporter Gene Family AT1G66570 55.1 1.8e-82 303.5
Cme03g01774 . 21 437 Sucrose Transporter Gene Family AT2G14670 50.5 7.1e-117 417.9
Cme05g00917 . 2 334 Sucrose Transporter Gene Family AT2G14670 58.8 8.4e-110 394.4
Cme05g00917 . 2 334 Sucrose Transporter Gene Family AT5G06170 55.5 1.0e-99 360.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30