Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01778 ATGTCTCCACCATTACTTGATGTTGGGGAGGTGGAGGAAAGTCGCAGCAATGTCACTCTGTTGGCTTCCTCAAACTCGATGGAGAGTGTCAGTCCCAACAATTTGGGATTTGAAGAGCGTAATTACATGGGATTATCTGATTCTTCTTCAGAGGACAGCTGTATGACTGCCACAAAATCCGATGGGAACAAACCCTCGCTGAATCTTAAGGCTACAGAACTGAGGCTTGGTCTCCCTGGATCTGAATCCCCCGAGAGGGATCCGGATAATTGCTTGCGTAGCTCTTCTCAACTTGATGAAAAACCACTATTTCCTTTGCACCCATCAAGTGATGGTCATTACTCTTCCCCACAAAAGACTGTTGTCTCAGGCAACAAAAGGGGGTTTTCTGATGCTATGAACGAATTCTCAGAGGAAAAATATCACGCTAACATAGGTTTGAAAGCTGGTTCTTTGCTAGAGAACCTTGGAAGTCAAATGGGGAAAGTGAAAGAGCCAACTACACAAAAGGCTGTACAAGAGAGGCCTCAAGAAAATAGTGAATCTAGACCATCTCATAATGAAACTGCTAATAACAACACCAGCGCACCTGTTTCCAAGGCACAGGTTGTGGGTTGGCCGCCCATAAGATCTTTCAGGAAGAACACATTGGCTACAACTTCAAAGAACAACGATGAAGTTGATGGAAAGGCAATGGCTGGGGCACTCTTTATCAAAGTCAGCATGGATGGTGCTCCTTATCTTAGGAAGGTAGATCTGAGGAATTACTCTGCCTATCAGGAGCTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTCACTATAGGTGAGCTTTTTGAAACTTTCTATTCAATTGAAAAATCTGTCACATGA 873 44.1 MSPPLLDVGEVEESRSNVTLLASSNSMESVSPNNLGFEERNYMGLSDSSSEDSCMTATKSDGNKPSLNLKATELRLGLPGSESPERDPDNCLRSSSQLDEKPLFPLHPSSDGHYSSPQKTVVSGNKRGFSDAMNEFSEEKYHANIGLKAGSLLENLGSQMGKVKEPTTQKAVQERPQENSESRPSHNETANNNTSAPVSKAQVVGWPPIRSFRKNTLATTSKNNDEVDGKAMAGALFIKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGELFETFYSIEKSVT 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26272540 26278690 - MELO3C011111.2.1 Cme03g01778 323789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01778 290 MobiDBLite consensus disorder prediction 20 36 - -
Cme03g01778 290 Pfam AUX/IAA family 71 278 IPR033389 -
Cme03g01778 290 MobiDBLite consensus disorder prediction 183 200 - -
Cme03g01778 290 MobiDBLite consensus disorder prediction 168 182 - -
Cme03g01778 290 MobiDBLite consensus disorder prediction 80 94 - -
Cme03g01778 290 MobiDBLite consensus disorder prediction 20 126 - -
Cme03g01778 290 MobiDBLite consensus disorder prediction 43 67 - -
Cme03g01778 290 PANTHER AUXIN-RESPONSIVE PROTEIN 16 140 - -
Cme03g01778 290 PANTHER AUXIN-RESPONSIVE PROTEIN 161 277 - -
Cme03g01778 290 ProSiteProfiles PB1 domain profile. 235 290 IPR000270 GO:0005515
Cme03g01778 290 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 140 IPR003311 GO:0005634|GO:0006355
Cme03g01778 290 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 161 277 IPR003311 GO:0005634|GO:0006355
Cme03g01778 290 MobiDBLite consensus disorder prediction 111 126 - -
Cme03g01778 290 MobiDBLite consensus disorder prediction 160 200 - -
Cme03g01778 290 Gene3D - 230 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01778 K14484 IAA; auxin-responsive protein IAA - csv:101221088 542.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01778 Cme-Chr3:26272540 Cme01g02713 Cme-Chr1:34396581 3.85E-34 dispersed
Cme03g01778 Cme-Chr3:26272540 Cme08g00701 Cme-Chr8:4679939 3.59E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g561 . . . . . . . . Cmo05g00590 . . . . . . . . Bhi04g00902 Tan02g2510 . . Hepe10g0403 . Lcy13g1453 Cla08g01185 Cam08g1650 Cec08g1226 Cco08g1345 Clacu08g1346 . Cre08g1132 Cone6ag1502 Cone9ag1428 . . . . . Cme03g01778 Blo17g00086 . . Bda13g01347 . . . . . . . . Cma05g00564 Car05g00510 . Cpe11g00495 . . . . . . . . . . . . . . . Lsi08g01048 Csa02g02232 Chy03g01285 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000884 4 6 5 5 3 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 5 7 1 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41063 PF02309 AUX_IAA 2.20E-48 CL0072 Cme TR