Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01779 ATGGAGCTCGACGAACACGTCTTCTTAGAGGAGTTAATGGCTCTACGAAGAGATCCAAATTGGGAAGCCATTCCAAACGAAATCACCGATCTCTGCTCAAATGCTTGGCCATTCGATTATTGTTTCGATCAGACCACTCTTAATTTTCCCCCAAATTCTTCCTCACAACCTCTCTCCACTCACAATCTCCACGAATTTTACAATCCTTTACCAAATGAGTTCTCAGTACCACAAATTCCTGATTCCGCCTTTACGACCATGGAAGTAGCCGCAGCGCCTCTGCCATTTCAGCCAGAGCATCCGAATGTAGAACGAGAAGAGGAGGAGGAGGAGGAGCAATTAGGTTTTCTAGCGGATGAGATTCAGAATATGGAAACAGTTCAAGTTGAATCGAGTTGTAAAATGGAGCCGAATCAATCTCCGGAAGAACTCCAGGTTTTCAACATCGGAACATGCTCCTCCTCCTCCTCCTCCTTGGAACGAAAGAACAGAGCGAAGAAATTGCAAGGGCAACCGTCGAAGAATCTGATGGCGGAGAGAAGGAGAAGGAAGCGGTTGAACGATCGACTGTCAATGCTCAGATCTATCGTTCCGAAGATCAGTAAGATGGATAGAACGGCGATTCTGGCAGATGCGATTGAGTACATGAAAGAATTGCTGGAGAAGATCGGGAATCTTCAAAGTGAAGTGGAAGGATCAAATTCGAGGATGAATTCGTTGAAGAACACAAAACCGAGTGAATTCGTAGTGAGAAATTCACCAAAATTTGAAGTGGAAAGCAGAAATGGAGAGACGAGAATCGAGATTTGTTGTGGAGGAAAACCAGGATTGGTATTATCAACGGTGAATACGATTGAAGCATTGGGGCTCGAGATTCAACAATGTGTTATTAGCTGCTTCAATGACTTCGCATTGCAAGCCACCTGCTCTTCTCAGGAATTGAAGCAGAGAAGAGAAGTGAAGGCAGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGTTATGGAGGAAGCTGCTTGTAG 1023 44.48 MELDEHVFLEELMALRRDPNWEAIPNEITDLCSNAWPFDYCFDQTTLNFPPNSSSQPLSTHNLHEFYNPLPNEFSVPQIPDSAFTTMEVAAAPLPFQPEHPNVEREEEEEEEQLGFLADEIQNMETVQVESSCKMEPNQSPEELQVFNIGTCSSSSSSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQSEVEGSNSRMNSLKNTKPSEFVVRNSPKFEVESRNGETRIEICCGGKPGLVLSTVNTIEALGLEIQQCVISCFNDFALQATCSSQELKQRREVKAEELKEALFRNAGYGGSCL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26288771 26290815 - MELO3C011110.2.1 Cme03g01779 323790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01779 340 Gene3D - 173 246 IPR036638 GO:0046983
Cme03g01779 340 CDD ACT_UUR-ACR-like 265 329 - -
Cme03g01779 340 PANTHER DNA BINDING PROTEIN 3 340 - -
Cme03g01779 340 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 340 - -
Cme03g01779 340 Pfam Helix-loop-helix DNA-binding domain 176 219 IPR011598 GO:0046983
Cme03g01779 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 238 IPR036638 GO:0046983
Cme03g01779 340 Coils Coil 209 243 - -
Cme03g01779 340 MobiDBLite consensus disorder prediction 152 176 - -
Cme03g01779 340 Coils Coil 107 127 - -
Cme03g01779 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Cme03g01779 340 SMART finulus 176 225 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01779 Cme04g00212 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01779 Cme-Chr3:26288771 Cme06g01892 Cme-Chr6:22430202 9.27E-13 dispersed
Cme12g01562 Cme-Chr12:23013361 Cme03g01779 Cme-Chr3:26288771 1.37E-20 transposed
Cme03g01779 Cme-Chr3:26288771 Cme04g00212 Cme-Chr4:1591415 5.08E-81 wgd
Cme03g01779 Cme-Chr3:26288771 Cme08g00704 Cme-Chr8:4701993 1.26E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41064 PF00010 HLH 6.30E-10 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01779 - - csv:101221329 621.313