Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01781 ATGGTGGTTAGAAAAGTCGGCAAGTACGAGGTCGGGAGGACGATTGGTGAAGGTACTTTCGCGAAGGTAAAGTTTGCTCAAAACACTGAGACTGGCGAGAGTGTTGCTATGAAAGTCCTCGATCGGAGCACCATAATCAAGCACAAGATGGTCGAGCAGATAAAGAAGGAGATTTCAATCATGAAGCTTGTGAGGCACCCTTATATTGTTCGTCTTCATGAGGTTCTTGCAAGCCGTACTAAGATTTACATAATCTTGGAGTACATTACTGGTGGTGAATTGTTTGACAAAATAGTTCGTCATGGACGGCTTAGTGAAGCTGAATCTAGGAAGTACTTCCAACAGCTAATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTATACCACAGAGATTTAAAACCTGAGAATCTGCTACTCGACTCCCTAGGTAATTTAAAGATCTCAGACTTTGGTCTGAGTGCGTTGCCTGAACAAGGAGTTAGCCTACTCCGCACAACATGTGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTACGATGGTGCCATGGCAGATGTTTGGTCCTGTGGGGTAATCCTTTATGTGTTGATGGCAGGATATCTTCCATTTGATGAGCTTGATCTCACCACGTTATATAGTAAGATTGAAAGAGCAGACTTTTCATGTCCATCTTGGTTCCCGGTGGGGGCAAAAGCCTTAATCTGCAGAATATTTGACCCCAATCCTTCTACTCGTATTACAATCGAACAGATCAGAGAGAACGAGTGGTTCAAGAAAAATTATGTTTCTGTCAAATTGGTCGAAGATGAAGATGTAAATCTAGACGATGTGAATGCTGTCTTTGATGATCCTGAGGAACCAAGGACCGAAGAACAAAGCGGTAACGAGAATATGAGCCCTCTGGCCCTTAATGCATTTGATCTAATAATTCTATCGCAAGGTTTAAACCTGGGAACGATGTTTGACCGTGGCCAGGATTCTATGAAGTACCCTACACGCTTCGTCTGCCAAAAGCCTGCAAAGGTCTTATTGTCAACAATGGAAGTCGTAGCTCAATCAATGGGTTTCAAGACACACATACGCAATTACAAGATGAGAGTAGAAGGTCCTTCGGCAAGTAAAACATCCTATTTCTCAGTCATTATGGAAATTTTTGAAGTTGCTCCCACGTTCTATATGGTCGACATTCAGAAAGCAGCTGGGGAAACCAGCGAGTACCTCAAGTTCTACAAGAGCTTTTATAGCAATCTTGAAGATATCGTCTGGAAACCATCATTTGACACCAGCAAATCGAGGAGCGGCAAGAACAAAAGTAAAAAACGTTGA 1341 43.03 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVEQIKKEISIMKLVRHPYIVRLHEVLASRTKIYIILEYITGGELFDKIVRHGRLSEAESRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGVILYVLMAGYLPFDELDLTTLYSKIERADFSCPSWFPVGAKALICRIFDPNPSTRITIEQIRENEWFKKNYVSVKLVEDEDVNLDDVNAVFDDPEEPRTEEQSGNENMSPLALNAFDLIILSQGLNLGTMFDRGQDSMKYPTRFVCQKPAKVLLSTMEVVAQSMGFKTHIRNYKMRVEGPSASKTSYFSVIMEIFEVAPTFYMVDIQKAAGETSEYLKFYKSFYSNLEDIVWKPSFDTSKSRSGKNKSKKR 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26306656 26312912 + MELO3C011108.2.1 Cme03g01781 323792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01781 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01781 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 443 - -
Cme03g01781 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Cme03g01781 446 Gene3D Kinase associated domain 1, KA1 307 428 - -
Cme03g01781 446 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01781 446 CDD CIPK_C 309 424 - -
Cme03g01781 446 Pfam NAF domain 305 363 IPR004041 GO:0007165
Cme03g01781 446 PANTHER - 2 443 - -
Cme03g01781 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Cme03g01781 446 SUPERFAMILY Protein kinase-like (PK-like) 6 263 IPR011009 -
Cme03g01781 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01781 446 Gene3D Transferase(Phosphotransferase) domain 1 3 306 - -
Cme03g01781 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01197 Cme-Chr2:17233080 Cme03g01781 Cme-Chr3:26306656 0 dispersed
Cme03g01781 Cme-Chr3:26306656 Cme05g00043 Cme-Chr5:306287 0 dispersed
Cme03g01781 Cme-Chr3:26306656 Cme08g00116 Cme-Chr8:871731 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64763 PF00069 Pkinase 5.40E-72 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01781 - - csv:101222107 848.966