Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01795 ATGAAAGGCGATTTTGCTCATCCCAAGAGCAAAACTTCCAATATGTTATCCAAATTCCATCTCTCCCCCCACCCTTTTACCCACCATCCTCCTCCGCAACCTCCCGCCGATGAGCCCGCCGCCGCCATGCCTTCCCCTTTTAAACACCACCCGGATCTCACCTCCACCGCCGATGGTTCCACCATCGAGGTGGTCCGACGGCCCAGAGGTCGCCCACCGGGTTCTAAAAATAAACCCAAACCGCCTCTTGTTGTAACCCGGGAACCCGAACCGGCTATGCGGCCGTACGTTCTAGAAGTCCCTGGTGGAAACGACGTCGTTGAAGCTATTTCGAGATTTTCCCGTCGCAAAAATTTGGGCCTTTGTGTCCTTAATGGATCCGGTACCGTTGCTAATGTCTCTCTCCGTCAACCCTCCGCCACTCCTGGCGCTACCGTTACTTTTCACGGCCGTTTTGAGATTCTCTCCATTTCCGCTACCGTTTTCCCTCAATCGACACCCTTACCGATACCTAATGGTTTTACCATCTCCCTCGCCGGGCCTCAGGGTCAAATCGTCGGCGGCTTGGTTGCCGGCGCGTTAATTGCCGCCGGTACTGTTTTTGTCGTCGCGTCGTCGTTTAATAATCCGTTGTACCACCGGCTTCCTGATGAGGAAGAGATTAAGAATTTGGGATCCGGTGGCGGCAGTGGCGGTGGCGAAGTTCACTCCCCACACGTCTCCGGCGGCGGAGACAGTAGCGGGCAGGGACACGGACACGGGCACGGGCAGATTGCGGAAACGTGTGGAATGGCTATGTATAGTTGCCACGCGCCGTCCGATGTAATTTGGGCGCCGACGGCGAGGCAACCGCCCCCGCCGTACTGA 867 56.63 MKGDFAHPKSKTSNMLSKFHLSPHPFTHHPPPQPPADEPAAAMPSPFKHHPDLTSTADGSTIEVVRRPRGRPPGSKNKPKPPLVVTREPEPAMRPYVLEVPGGNDVVEAISRFSRRKNLGLCVLNGSGTVANVSLRQPSATPGATVTFHGRFEILSISATVFPQSTPLPIPNGFTISLAGPQGQIVGGLVAGALIAAGTVFVVASSFNNPLYHRLPDEEEIKNLGSGGGSGGGEVHSPHVSGGGDSSGQGHGHGHGQIAETCGMAMYSCHAPSDVIWAPTARQPPPPY 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26405468 26406605 - MELO3C011096.2.1 Cme03g01795 323806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01795 288 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 209 IPR005175 -
Cme03g01795 288 Gene3D - 93 225 - -
Cme03g01795 288 MobiDBLite consensus disorder prediction 222 257 - -
Cme03g01795 288 PIRSF ESCAROLA 9 287 IPR014476 GO:0003680
Cme03g01795 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 49 287 - -
Cme03g01795 288 ProSiteProfiles PPC domain profile profile. 90 228 IPR005175 -
Cme03g01795 288 CDD DUF296 94 207 IPR005175 -
Cme03g01795 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 49 287 IPR014476 GO:0003680
Cme03g01795 288 MobiDBLite consensus disorder prediction 1 86 - -
Cme03g01795 288 MobiDBLite consensus disorder prediction 25 41 - -
Cme03g01795 288 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01795 Cme-Chr3:26405468 Cme11g02481 Cme-Chr11:31446850 5.62E-46 dispersed
Cme02g00745 Cme-Chr2:9389020 Cme03g01795 Cme-Chr3:26405468 1.19E-34 transposed
Cme03g01795 Cme-Chr3:26405468 Cme04g00240 Cme-Chr4:1892465 6.61E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01795 - - csv:101203998 471.085