Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01799 ATGGCGAGGGAGAAAATCAAGATAAAGAAGATTGATAACCTAACGGCGAGGCAGGTCACGTTCTCTAAGCGACGGCGAGGGCTTATGAAGAAGGCCGAGGAGCTCTCAGTCCTGTGCGACGCCGAAGTTGCGCTCCTCGTCTTCTCTGCCACCGGAAAGTTCTTTGAGTATTCTAGCTCCAGCATTAAAGATGTTATAGCTAGATATAATTTGCACTCTAGTAACCTTGGAAAGTTGGAATATCCATCCATCGGGTTGCAGGCTGAAGATAGCAACCACGTCCGATTGAATAAGGAAGTTGAAGAAATGAGCCAACAACTTAGGCAGATGAGGGGAGAGGATCTTCAAGGATTGAACTTAGAAGATTTGAAGCAATTGGAAAGAAAGCTTGAAGTTGGTCTCACACGAGTTCTTCACACCAAGGAAAAGAAGATTATGAGTGAAATTGATGCGCTTGAGCTTAAGGGAGCGAGGCTGATGGAAGAAAATAAGATGCTTAAACAGCAGATGTTAAGGTTGTCGAATGAGAGATTAATGGCTGTGCTTGTGGATTCCTCCGACGTTCGTGTAGTGGTGGAAGAAGGAGTTTCGTCGGAATCCGCCGCCAACGTCTATAGCTGCAACAGCGGCCCTCCTGCCGACGACGACAGCTCCGACACCTCTCTCAAATTAGGGCCTCCTTGTCCAAATTGA 693 47.04 MAREKIKIKKIDNLTARQVTFSKRRRGLMKKAEELSVLCDAEVALLVFSATGKFFEYSSSSIKDVIARYNLHSSNLGKLEYPSIGLQAEDSNHVRLNKEVEEMSQQLRQMRGEDLQGLNLEDLKQLERKLEVGLTRVLHTKEKKIMSEIDALELKGARLMEENKMLKQQMLRLSNERLMAVLVDSSDVRVVVEEGVSSESAANVYSCNSGPPADDDSSDTSLKLGPPCPN 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26427551 26434333 + MELO3C011093.2.1 Cme03g01799 323810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01799 230 Coils Coil 149 176 - -
Cme03g01799 230 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme03g01799 230 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Cme03g01799 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Cme03g01799 230 MobiDBLite consensus disorder prediction 202 216 - -
Cme03g01799 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme03g01799 230 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 224 - -
Cme03g01799 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme03g01799 230 MobiDBLite consensus disorder prediction 202 230 - -
Cme03g01799 230 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Cme03g01799 230 Coils Coil 86 113 - -
Cme03g01799 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme03g01799 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme03g01799 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme03g01799 230 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Cme03g01799 230 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme03g01799 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme03g01799 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01799 Cme-Chr3:26427551 Cme08g00728 Cme-Chr8:4841959 5.17E-90 dispersed
Cme03g01799 Cme-Chr3:26427551 Cme08g00712 Cme-Chr8:4739672 1.67E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41066 PF01486 K-box 5.70E-16 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01799 - - csv:101213234 405.986