Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01806 ATGGTTCATCCTGGTTCGACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGTCAAGGGAAAGACTCGTCTACATCTTGTTACTGTCGTTCCTACATCACATGGTCTGAGGCACAATCCTGGAAGTCTTCAGCTCTTACGGAGTGTAAGTCGCCCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTAGAATCAGGTGGCGGAGCTGGGACTGCTGTTCTAAAGTCTGCAGCTGTGGTTTTGACGAGATCTTGTGATGCCTTACGTAGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTATTGGACCTCTTATGCGCTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGAAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAACCTCTACTGCTATGGACTGGAGCTACGCTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCATCGGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCTTTGTCTACTGTTCTGGCATTTGCCTATTGTCTATCAAGCTTGATTCAACAAGTACAAAAGTTTGCTTATGAATCAAATGACTCAAGTGATGCAAGAAATATGGGCTTTGATTTTGCCGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCCCTTTCATTGTTCATGGAATTGCTCGGCTTTTCTACTCAGAAGTGGCTCACTGCCGGAGGTCTCGGGACTGTATTGCTTACTCTTGCTGGTCGTGAGATATTTACTAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCGTTTGTGGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTATCAGGAACGGTTGAGCATGTTGGTTGGTGGTCGCCAACCATCATCCGAGGCGATGATCGTGAAGCGGTCCATATTCCTAATCACAAATTCACTGTTAGTATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTCAATAAGATCAATTATATTGTAGCTGACATGCGCAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATTTTTTTGGATAACGTCAATCCTGAAAACCAGGCTCTTATGATCATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTGAAGGAGGCAATTCTCTTGGATCTTCTCAGAGTTATCAGCCATCATAGGGCCCGGCTTGCCACTCCTATTCGCACTGTTCAGAAAATATATGGCGAGGCTGATTTGGAGAACGTACCATTTTCTGAGACCATGTATTCTCGTTCAGGGGCTACTAACCGTCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGATGACAAAACAAAAGTCTCTAGTCGTCCCACTCGTTCATCAACTGAAGAAAAGGAAGCCAAACAAGAGGCAGTCTCGACGTCAGGGACAAAAGCCCCCGACACAACTGGACCAACTTCAAATCTTGATATGAAAGCAGATGATAAAAAATCAATTTCTCCATCTGGTACTACACCTAAGCCTTCAGCCCCCAATCTATCAACCGGCAGTCCAGAACAAAGCAGTGCGGAAAAGCCAGTAACAAGCAATGAGATAAAAGGAGAAAAGAAAGATCTCTTGGGACTGAATTCCAAAGACAACATGCCACGAGGAACTCCGCCCAAAAGATCGCCTTCAGCTTCCAGTCCTGGGAGCGAGAAAGCTGATATTCCTTCAACAAGCTCGCAAAATAAGCAAGATGGGGAGAAGACGTCTGCATCACCATCAGTGGTGAGGCCACCATTGGAGGAGAATATTGTGCTGGGAGTTGCCTTGGAAGGTTCCAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAATTTCCACGCAGAGGAATGGGAGTGAGTTTCCCCCCAACAGTAAGGATTTGAAAGATGGTCAAATGCCTGCCGTTCCAGGTGCGACGAAAAATGATTGA 2112 43.66 MVHPGSTQFSHKLGIQSVHGCNKLHISVKGKTRLHLVTVVPTSHGLRHNPGSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAVVLTRSCDALRSSPLLLKLIPAACVIAFAAWGIGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQKFAYESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRSGATNRPLLLIEPSYKVNGDDKTKVSSRPTRSSTEEKEAKQEAVSTSGTKAPDTTGPTSNLDMKADDKKSISPSGTTPKPSAPNLSTGSPEQSSAEKPVTSNEIKGEKKDLLGLNSKDNMPRGTPPKRSPSASSPGSEKADIPSTSSQNKQDGEKTSASPSVVRPPLEENIVLGVALEGSKRTLPIDEDLDSKEISTQRNGSEFPPNSKDLKDGQMPAVPGATKND 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26454858 26461518 - MELO3C011088.2.1 Cme03g01806 323817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01806 703 MobiDBLite consensus disorder prediction 494 520 - -
Cme03g01806 703 Gene3D - 298 353 IPR023408 -
Cme03g01806 703 Pfam Mechanosensitive ion channel 239 446 IPR006685 GO:0016020|GO:0055085
Cme03g01806 703 MobiDBLite consensus disorder prediction 603 635 - -
Cme03g01806 703 MobiDBLite consensus disorder prediction 491 703 - -
Cme03g01806 703 MobiDBLite consensus disorder prediction 547 577 - -
Cme03g01806 703 Gene3D - 192 296 - -
Cme03g01806 703 MobiDBLite consensus disorder prediction 578 592 - -
Cme03g01806 703 MobiDBLite consensus disorder prediction 521 538 - -
Cme03g01806 703 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Cme03g01806 703 MobiDBLite consensus disorder prediction 659 673 - -
Cme03g01806 703 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 695 IPR045042 -
Cme03g01806 703 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 695 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01806 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 1344.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01806 Cme-Chr3:26454858 Cme06g02224 Cme-Chr6:28835312 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g00164 . 129 520 Mechanosensitive Ion Channel Family AT4G00290 65.8 9.0e-152 533.9
Cme03g01806 . 10 692 Mechanosensitive Ion Channel Family AT5G10490 57.4 7.2e-197 684.1
Cme06g02224 . 18 635 Mechanosensitive Ion Channel Family AT5G10490 55.3 2.2e-169 592.8
Cme03g01806 . 10 672 Mechanosensitive Ion Channel Family AT1G58200 57.4 7.3e-197 684.1
Cme06g02224 . 37 417 Mechanosensitive Ion Channel Family AT1G58200 69.0 3.0e-150 529.3
Cme11g01254 . 43 927 Mechanosensitive Ion Channel Family AT1G53470 55.4 3.9e-259 891.3
Cme01g01219 . 84 951 Mechanosensitive Ion Channel Family AT1G53470 50.4 1.2e-236 816.6
Cme11g01254 . 43 927 Mechanosensitive Ion Channel Family AT3G14810 52.8 5.6e-247 850.9
Cme11g01254 . 43 918 Mechanosensitive Ion Channel Family AT1G78610 59.2 1.5e-279 959.1
Cme01g01219 . 52 951 Mechanosensitive Ion Channel Family AT1G78610 55.6 1.8e-272 935.6
Cme11g01254 . 217 927 Mechanosensitive Ion Channel Family AT2G17000 60.7 2.6e-236 815.5
Cme01g01219 . 266 939 Mechanosensitive Ion Channel Family AT2G17000 58.0 1.9e-218 756.1
Cme02g00283 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.4 2.8e-194 675.6
Cme07g00186 . 61 715 Mechanosensitive Ion Channel Family AT5G12080 53.3 4.3e-187 651.7
Cme07g00187 . 81 730 Mechanosensitive Ion Channel Family AT5G12080 52.6 2.0e-176 616.3
Cme07g00182 . 68 703 Mechanosensitive Ion Channel Family AT5G12080 52.6 1.6e-173 606.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71