Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01814 ATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCGACTGTGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTAGATATGGAGCTCACTCTCTTGAAGACGGTGGTGGAGTAGGCGGCATGGTCGAGGTTCTCAACCCCGATGCTGTTTATGTTCCCGCCGGTGATGGGTCGGACTTGGCTGTTCAGCGCAGTGATGGTTCGAATCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGACGCTGTCTCCCCTGAGAAGGTTCAAGCAGTTTTGCTGTTGTTGGGTGGTTGCGAATTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAAATCCAAACCAGAGGAATGCTTTGGACTTCCCTGGACGGAGTAGTCAACCTCAGAGAGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAACGATGTTTCGAAAAGAAAGTTAGATACGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAAAAGTCGGATGGTTCGTATAGCCATGGCAATGTCTCAGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGTCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCATGCGGGCTCTTTTGGGCAAACAGGGGAACTTTAAGGGATCTTCCAAAGAGAAGTCAGGACCATCCGGTGACCCCGGCAGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGGTAACCATGCGCCAAGCAATCTCGTTTCTTTCTCCAACGGTGATAACTCTGCTTTAATGGCTGAGCATTAG 882 50.11 MYARAQPLTMGDQIADCGDSGEPLDNRLVRYGAHSLEDGGGVGGMVEVLNPDAVYVPAGDGSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNALDFPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALRMQRNKGQFTSSKKSDGSYSHGNVSELGQDESPPETSCTNCGISSMSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLPKRSQDHPVTPAEQCESDGGKDLDCRHGNHAPSNLVSFSNGDNSALMAEH 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26511985 26517564 + MELO3C011079.2.1 Cme03g01814 323825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01814 293 CDD ZnF_GATA 202 249 IPR000679 GO:0006355|GO:0043565
Cme03g01814 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 246 - -
Cme03g01814 293 MobiDBLite consensus disorder prediction 168 206 - -
Cme03g01814 293 MobiDBLite consensus disorder prediction 242 293 - -
Cme03g01814 293 SMART tify_2 68 103 IPR010399 -
Cme03g01814 293 Gene3D - 193 252 IPR013088 GO:0006355|GO:0008270
Cme03g01814 293 PANTHER GATA TRANSCRIPTION FACTOR 25 22 271 - -
Cme03g01814 293 SMART GATA_3 197 250 IPR000679 GO:0006355|GO:0043565
Cme03g01814 293 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355|GO:0043565
Cme03g01814 293 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515
Cme03g01814 293 Pfam tify domain 70 102 IPR010399 -
Cme03g01814 293 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355|GO:0043565
Cme03g01814 293 ProSiteProfiles GATA-type zinc finger domain profile. 197 256 IPR000679 GO:0006355|GO:0043565
Cme03g01814 293 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Cme03g01814 293 Pfam CCT motif 135 177 IPR010402 GO:0005515
Cme03g01814 293 PANTHER GATA TRANSCRIPTION FACTOR 28 22 271 IPR045280 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00214 Cme-Chr1:1534633 Cme03g01814 Cme-Chr3:26511985 7.74E-78 dispersed
Cme03g01814 Cme-Chr3:26511985 Cme08g02346 Cme-Chr8:30431867 2.63E-09 dispersed
Cme03g01814 Cme-Chr3:26511985 Cme03g01815 Cme-Chr3:26519205 1.17E-61 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41067 PF06203 CCT 5.60E-15 CL0281 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01814 - - csv:101214839 563.918