Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01814 ATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCGACTGTGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTAGATATGGAGCTCACTCTCTTGAAGACGGTGGTGGAGTAGGCGGCATGGTCGAGGTTCTCAACCCCGATGCTGTTTATGTTCCCGCCGGTGATGGGTCGGACTTGGCTGTTCAGCGCAGTGATGGTTCGAATCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGACGCTGTCTCCCCTGAGAAGGTTCAAGCAGTTTTGCTGTTGTTGGGTGGTTGCGAATTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAAATCCAAACCAGAGGAATGCTTTGGACTTCCCTGGACGGAGTAGTCAACCTCAGAGAGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAACGATGTTTCGAAAAGAAAGTTAGATACGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAAAAGTCGGATGGTTCGTATAGCCATGGCAATGTCTCAGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGTCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCATGCGGGCTCTTTTGGGCAAACAGGGGAACTTTAAGGGATCTTCCAAAGAGAAGTCAGGACCATCCGGTGACCCCGGCAGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGGTAACCATGCGCCAAGCAATCTCGTTTCTTTCTCCAACGGTGATAACTCTGCTTTAATGGCTGAGCATTAG 882 50.11 MYARAQPLTMGDQIADCGDSGEPLDNRLVRYGAHSLEDGGGVGGMVEVLNPDAVYVPAGDGSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNALDFPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALRMQRNKGQFTSSKKSDGSYSHGNVSELGQDESPPETSCTNCGISSMSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLPKRSQDHPVTPAEQCESDGGKDLDCRHGNHAPSNLVSFSNGDNSALMAEH 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26511985 26517564 + MELO3C011079.2.1 Cme03g01814 323825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01814 293 CDD ZnF_GATA 202 249 IPR000679 GO:0006355|GO:0043565
Cme03g01814 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 246 - -
Cme03g01814 293 MobiDBLite consensus disorder prediction 168 206 - -
Cme03g01814 293 MobiDBLite consensus disorder prediction 242 293 - -
Cme03g01814 293 SMART tify_2 68 103 IPR010399 -
Cme03g01814 293 Gene3D - 193 252 IPR013088 GO:0006355|GO:0008270
Cme03g01814 293 PANTHER GATA TRANSCRIPTION FACTOR 25 22 271 - -
Cme03g01814 293 SMART GATA_3 197 250 IPR000679 GO:0006355|GO:0043565
Cme03g01814 293 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355|GO:0043565
Cme03g01814 293 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515
Cme03g01814 293 Pfam tify domain 70 102 IPR010399 -
Cme03g01814 293 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355|GO:0043565
Cme03g01814 293 ProSiteProfiles GATA-type zinc finger domain profile. 197 256 IPR000679 GO:0006355|GO:0043565
Cme03g01814 293 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Cme03g01814 293 Pfam CCT motif 135 177 IPR010402 GO:0005515
Cme03g01814 293 PANTHER GATA TRANSCRIPTION FACTOR 28 22 271 IPR045280 GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01814 - - - csv:101214839 563.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00214 Cme-Chr1:1534633 Cme03g01814 Cme-Chr3:26511985 7.74E-78 dispersed
Cme03g01814 Cme-Chr3:26511985 Cme08g02346 Cme-Chr8:30431867 2.63E-09 dispersed
Cme03g01814 Cme-Chr3:26511985 Cme03g01815 Cme-Chr3:26519205 1.17E-61 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g02738 . 1 230 Tify Gene Family AT3G21175 56.5 8.6e-59 223.8
Cme03g01814 . 45 293 Tify Gene Family AT4G24470 53.4 3.2e-70 262.3
Cme01g00214 . 89 267 Tify Gene Family AT4G24470 59.1 3.5e-48 189.1
Cme01g02738 . 1 290 Tify Gene Family AT1G51600 58.7 6.1e-87 317.8
Cme01g00214 . 86 274 Tify Gene Family AT1G51600 59.9 2.9e-52 202.6
Cme03g01815 . 83 258 Tify Gene Family AT1G51600 59.0 5.4e-51 198.4
Cme03g01814 . 38 247 Tify Gene Family AT1G51600 52.2 5.6e-48 188.3
Cme03g01814 . 45 293 Tify Gene Family AT4G24470 53.4 3.2e-70 262.3
Cme01g00214 . 89 267 Tify Gene Family AT4G24470 59.1 3.5e-48 189.1
Cme01g02738 . 1 290 Tify Gene Family AT1G51600 58.7 6.1e-87 317.8
Cme01g00214 . 86 274 Tify Gene Family AT1G51600 59.9 2.9e-52 202.6
Cme03g01815 . 83 258 Tify Gene Family AT1G51600 59.0 5.4e-51 198.4
Cme03g01814 . 38 247 Tify Gene Family AT1G51600 52.2 5.6e-48 188.3
Cme01g02738 . 1 230 Tify Gene Family AT3G21175 56.5 8.6e-59 223.8
Cme05g00489 . 1 180 Tify Gene Family AT4G14713 51.0 2.3e-46 182.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41067 PF06203 CCT 5.60E-15 CL0281 Cme TF