Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01815 ATGAAGCTGGTTGACGTTAGGGCTTCGGACAAATTCATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCCTCAATGATGGGGGATGACGACGGTGAATATGAAGATGGTGGCGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCTGTGCTCTTACTTCTTGGAGGGCGTGATGTGCCAGCAGGTGTACCTACAATGGAAGTACCATATGATCATAATAACCGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTCGACAAAAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAAAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACACTGTGGTGTTAGTGAGAACAATACTCCTGCAATGCGTCGTGGCCCTGCTGGACCAAGGACCTTATGCAATGCATGTGGTTTGATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCCCTGGATCATATGGAACCTGAAACTCCAATGGATGTCAAGCCTGTAATCATGGAGGGAGAATTTTCAGGCATCCAGGATGAACATGGAACTCCAGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCTGGATGAAGAAGTAACTCCGTTCATTCACCAAGATATAAATTACCAAATCCCCGTTACGAAAATCAGCCCTTTCACCCAGTTACTCATGTCGACAAATTGGTTCATACCGGATTGGTGCTCTGGTATCTTGTTCTCTGTACTTTTGTCAACAAAGGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCATCAAACGATGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1239 46.73 MKLVDVRASDKFMAAANPQPLQARPFQEHVQVPSMMGDDDGEYEDGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPAGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPVIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDLDEEVTPFIHQDINYQIPVTKISPFTQLLMSTNWFIPDWCSGILFSVLLSTKDINETTGDLTNSLPMRIVNHSSNDDEQEPLVELANPSDTDIDIPTNFD 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26519205 26526401 + MELO3C011078.2.1 Cme03g01815 323826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01815 412 Pfam GATA zinc finger 216 252 IPR000679 GO:0006355|GO:0043565
Cme03g01815 412 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 13 412 - -
Cme03g01815 412 ProSitePatterns GATA-type zinc finger domain. 216 243 IPR000679 GO:0006355|GO:0043565
Cme03g01815 412 MobiDBLite consensus disorder prediction 288 308 - -
Cme03g01815 412 Pfam tify domain 80 111 IPR010399 -
Cme03g01815 412 SMART GATA_3 210 263 IPR000679 GO:0006355|GO:0043565
Cme03g01815 412 Gene3D - 208 266 IPR013088 GO:0006355|GO:0008270
Cme03g01815 412 ProSiteProfiles GATA-type zinc finger domain profile. 210 258 IPR000679 GO:0006355|GO:0043565
Cme03g01815 412 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 260 - -
Cme03g01815 412 CDD ZnF_GATA 215 259 IPR000679 GO:0006355|GO:0043565
Cme03g01815 412 Pfam CCT motif 145 186 IPR010402 GO:0005515
Cme03g01815 412 ProSiteProfiles CCT domain profile. 145 187 IPR010402 GO:0005515
Cme03g01815 412 SMART tify_2 77 112 IPR010399 -
Cme03g01815 412 ProSiteProfiles Tify domain profile. 77 112 IPR010399 -
Cme03g01815 412 PANTHER GATA TRANSCRIPTION FACTOR 28 13 412 IPR045280 GO:0006355
Cme03g01815 412 MobiDBLite consensus disorder prediction 34 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01815 - - - csv:101214596 638.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02738 Cme-Chr1:34565087 Cme03g01815 Cme-Chr3:26519205 2.16E-71 dispersed
Cme03g01815 Cme-Chr3:26519205 Cme12g01975 Cme-Chr12:25560215 1.67E-11 dispersed
Cme03g01814 Cme-Chr3:26511985 Cme03g01815 Cme-Chr3:26519205 1.17E-61 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g02738 . 1 230 Tify Gene Family AT3G21175 56.5 8.6e-59 223.8
Cme03g01814 . 45 293 Tify Gene Family AT4G24470 53.4 3.2e-70 262.3
Cme01g00214 . 89 267 Tify Gene Family AT4G24470 59.1 3.5e-48 189.1
Cme01g02738 . 1 290 Tify Gene Family AT1G51600 58.7 6.1e-87 317.8
Cme01g00214 . 86 274 Tify Gene Family AT1G51600 59.9 2.9e-52 202.6
Cme03g01815 . 83 258 Tify Gene Family AT1G51600 59.0 5.4e-51 198.4
Cme03g01814 . 38 247 Tify Gene Family AT1G51600 52.2 5.6e-48 188.3
Cme03g01814 . 45 293 Tify Gene Family AT4G24470 53.4 3.2e-70 262.3
Cme01g00214 . 89 267 Tify Gene Family AT4G24470 59.1 3.5e-48 189.1
Cme01g02738 . 1 290 Tify Gene Family AT1G51600 58.7 6.1e-87 317.8
Cme01g00214 . 86 274 Tify Gene Family AT1G51600 59.9 2.9e-52 202.6
Cme03g01815 . 83 258 Tify Gene Family AT1G51600 59.0 5.4e-51 198.4
Cme03g01814 . 38 247 Tify Gene Family AT1G51600 52.2 5.6e-48 188.3
Cme01g02738 . 1 230 Tify Gene Family AT3G21175 56.5 8.6e-59 223.8
Cme05g00489 . 1 180 Tify Gene Family AT4G14713 51.0 2.3e-46 182.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41068 PF06203 CCT 1.70E-13 CL0281 Cme TF