Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01815 ATGAAGCTGGTTGACGTTAGGGCTTCGGACAAATTCATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCCTCAATGATGGGGGATGACGACGGTGAATATGAAGATGGTGGCGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCTGTGCTCTTACTTCTTGGAGGGCGTGATGTGCCAGCAGGTGTACCTACAATGGAAGTACCATATGATCATAATAACCGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTCGACAAAAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAAAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACACTGTGGTGTTAGTGAGAACAATACTCCTGCAATGCGTCGTGGCCCTGCTGGACCAAGGACCTTATGCAATGCATGTGGTTTGATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCCCTGGATCATATGGAACCTGAAACTCCAATGGATGTCAAGCCTGTAATCATGGAGGGAGAATTTTCAGGCATCCAGGATGAACATGGAACTCCAGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCTGGATGAAGAAGTAACTCCGTTCATTCACCAAGATATAAATTACCAAATCCCCGTTACGAAAATCAGCCCTTTCACCCAGTTACTCATGTCGACAAATTGGTTCATACCGGATTGGTGCTCTGGTATCTTGTTCTCTGTACTTTTGTCAACAAAGGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCATCAAACGATGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1239 46.73 MKLVDVRASDKFMAAANPQPLQARPFQEHVQVPSMMGDDDGEYEDGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPAGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPVIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDLDEEVTPFIHQDINYQIPVTKISPFTQLLMSTNWFIPDWCSGILFSVLLSTKDINETTGDLTNSLPMRIVNHSSNDDEQEPLVELANPSDTDIDIPTNFD 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26519205 26526401 + MELO3C011078.2.1 Cme03g01815 323826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01815 412 Pfam GATA zinc finger 216 252 IPR000679 GO:0006355|GO:0043565
Cme03g01815 412 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 13 412 - -
Cme03g01815 412 ProSitePatterns GATA-type zinc finger domain. 216 243 IPR000679 GO:0006355|GO:0043565
Cme03g01815 412 MobiDBLite consensus disorder prediction 288 308 - -
Cme03g01815 412 Pfam tify domain 80 111 IPR010399 -
Cme03g01815 412 SMART GATA_3 210 263 IPR000679 GO:0006355|GO:0043565
Cme03g01815 412 Gene3D - 208 266 IPR013088 GO:0006355|GO:0008270
Cme03g01815 412 ProSiteProfiles GATA-type zinc finger domain profile. 210 258 IPR000679 GO:0006355|GO:0043565
Cme03g01815 412 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 260 - -
Cme03g01815 412 CDD ZnF_GATA 215 259 IPR000679 GO:0006355|GO:0043565
Cme03g01815 412 Pfam CCT motif 145 186 IPR010402 GO:0005515
Cme03g01815 412 ProSiteProfiles CCT domain profile. 145 187 IPR010402 GO:0005515
Cme03g01815 412 SMART tify_2 77 112 IPR010399 -
Cme03g01815 412 ProSiteProfiles Tify domain profile. 77 112 IPR010399 -
Cme03g01815 412 PANTHER GATA TRANSCRIPTION FACTOR 28 13 412 IPR045280 GO:0006355
Cme03g01815 412 MobiDBLite consensus disorder prediction 34 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02738 Cme-Chr1:34565087 Cme03g01815 Cme-Chr3:26519205 2.16E-71 dispersed
Cme03g01815 Cme-Chr3:26519205 Cme12g01975 Cme-Chr12:25560215 1.67E-11 dispersed
Cme03g01814 Cme-Chr3:26511985 Cme03g01815 Cme-Chr3:26519205 1.17E-61 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41068 PF06203 CCT 1.70E-13 CL0281 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01815 - - csv:101214596 638.647