Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01821 ATGCCGCCACTGGGTGTGCAGCTCTTTATCACAGAACGTCAGGTGACAATGGATAATGGCATAGTCCAAGTCACTTTATCAAACCCAGATGGCATAGTAACTGGAATTCGATACAATGGAGTTGACAACGTGCTTGAAGTCCTAAACGATGAAACTAACCGAGGGTACTGGGACCTCGTGTGGAGCTCATCATCGTCCTCAACTGGATTGTTTGATGTGATAAAGGCTACAGGTTTCAAGGTCATAGTGGAAAATGAAGAACAAGTGGAGCTCTCCTTTACAAGAACATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCTTTAGAGATTGATAAAAGGTTTATAATGCTCCGGGGTTCATCTGGGTTCTACTCTTATGCTATTTACCAACACCTGGAAGAATGGCCCGGTTTCAACCTTGGTGAAACTAGACTCGCCTTCAAACTCAGAAAAGACAATATTATTCTAGACATGGTCATTTATGGTTGGACACAAATATTCTTCCGTAGGTTCCACTATATGGCCATGGCAGACAACAGACAGAGGTACATGCCGCTTCCAGATGACCGTTCTCCACCTAGAGGTCGAGCCTTGGCATATCCAGAGGCCGTCCGGCTCATCGACCCCATCGAACCTGAGTTGCAGGGAGAGGTGGATGACAAGTATCAGTACTCATGCGACAACAAAGACAGCGGCGTTCATGGATGGATATCCACCGATCCGACAGTCGGATTCTGGCTAATCTCGCCCAGTAATGAGTTCCGGTCCGGTGGACCCGTTAAACAGAACCTAACTTCACACGTCGGCCCAACCACCCTAGCTGTTTTTATAAGCGCACATTACGCGGGAGAGGATCTGGTGCCGAAAATCGGAGCCGGCGAGGCATGGAAGAAAGTTTTCGGTCCTGTGTTTATCTATCTCAACTCCACTTATGATTCCTTCGACGCACTTCAGCTCTGGGAAGATGCCAAAGCACAGGCAGCAGTCGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGACGATTTTCCAAGGTCAAATCAACGTGGTAGTATCAGTGGTAAACTATTAGTCAAGGACAGCTACGTCGATGAAGACTTGATACCAGCAGGCGGTGCGTTTGTTGGCCTGGCTCCACCAGGAGACGTAGGATCATGGCAACGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGAAATTTTTTCATCGATGGCGTGAGGCCGGGCGACTATAATCTGTATGCATGGGTTCCCGGTTTTATTGGAGACTATCGTTATGATGCTCTCATCAACCTTAAAGAAGGCAGTGAGGTGGACATGGGAGACATAACATACGAACCTCCGAGACAAGGGGCCACACTATGGGAAATAGGAATCCCAGATCGCTCCGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACTACATCAATAAGCTCTACCTTAACCATCCTGATAAGTTTCGACAGTATGGCCTATGGGAAAGATACAGCGAATTGTTTCCCGACTCGGATTTGGTATATAACGTTGGCGTTAGTGACTACACCAAGGATTGGTTCTTTGCTCAAGTCCCCAGGAAGATTGAAAATGGAACATATAAGGGAACGACATGGCAAGTCAAGTTTGAGCTGGACAACGTAGACAACCAAGCAACTTATAAGCTTCGGGTTGCATTGGCCTCTGCTTCTCTCGCAGAATTGCAGGTTGGAGTTAATGAGGCCAAAGCAAAGGCAGTGTTCTCTAGCGGACTTATCGGGAGGGACAATTCCATTGCAAGACACGGCATTCACGGTCTGTATTGGCTTTACAACATTGACATTCCAGGAAATCGGCTGGTCACCGGCAATAACACCATCTTCTTCACCCAACCCAGAAGCACGGGCCCTTTCCAAGCCATTATGTACGATTACATTCGTCTGGAAGCTCCTCCACCTCCACCTCCATCCTCCGCCCATCCTTTGGAATAA 1983 47.91 MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNVLEVLNDETNRGYWDLVWSSSSSSTGLFDVIKATGFKVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLEEWPGFNLGETRLAFKLRKDNIILDMVIYGWTQIFFRRFHYMAMADNRQRYMPLPDDRSPPRGRALAYPEAVRLIDPIEPELQGEVDDKYQYSCDNKDSGVHGWISTDPTVGFWLISPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSFDALQLWEDAKAQAAVEVQSWPYSFPASDDFPRSNQRGSISGKLLVKDSYVDEDLIPAGGAFVGLAPPGDVGSWQRESKGYQFWSRADESGNFFIDGVRPGDYNLYAWVPGFIGDYRYDALINLKEGSEVDMGDITYEPPRQGATLWEIGIPDRSAAEFYVPDPNPNYINKLYLNHPDKFRQYGLWERYSELFPDSDLVYNVGVSDYTKDWFFAQVPRKIENGTYKGTTWQVKFELDNVDNQATYKLRVALASASLAELQVGVNEAKAKAVFSSGLIGRDNSIARHGIHGLYWLYNIDIPGNRLVTGNNTIFFTQPRSTGPFQAIMYDYIRLEAPPPPPPSSAHPLE 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26590816 26596994 - MELO3C011070.2.1 Cme03g01821 323832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01821 660 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 649 - -
Cme03g01821 660 Gene3D - 7 286 IPR014718 GO:0030246
Cme03g01821 660 Pfam Rhamnogalacturonate lyase family 11 218 IPR010325 -
Cme03g01821 660 Pfam Polysaccharide lyase family 4, domain II 373 443 IPR029413 -
Cme03g01821 660 SUPERFAMILY Galactose-binding domain-like 456 646 IPR008979 -
Cme03g01821 660 Gene3D - 346 443 - -
Cme03g01821 660 CDD RGL4_C 460 646 - -
Cme03g01821 660 SUPERFAMILY Galactose mutarotase-like 19 309 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cme03g01821 660 CDD RGL4_M 349 448 IPR029413 -
Cme03g01821 660 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 649 - -
Cme03g01821 660 SUPERFAMILY Starch-binding domain-like 347 443 IPR013784 GO:0030246
Cme03g01821 660 CDD RGL4_N 13 310 - -
Cme03g01821 660 Pfam Polysaccharide lyase family 4, domain III 458 645 IPR029411 -
Cme03g01821 660 Gene3D - 455 646 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01821 Cme-Chr3:26590816 Cme04g00226 Cme-Chr4:1714504 0 dispersed
Cme03g01821 Cme-Chr3:26590816 Cme04g00225 Cme-Chr4:1705493 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01821 K18195 - csv:101215720 1239.17