Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme03g01823 | ATGGCTCCTAGTTTTGACCTTGCTGTTTCTAACCTTTTATGCGCTGAAGAGAATTGCATTTTCGATAATAACGATGGTGATGATGAAACAGTAGTTGAGGAGTTTGTGATGGCTCCTTATTATCTTAGAACTGGTCGGAATCGGAACTACCGCCGTGGCGGCGGTGGTGAGGGGTTGCCGTTTATGAGCGATGAATGTTTGATTGAAATGGTTGAGAAGGAAGCCCAGCACTTGCCTGTTGATGGGTACCTTGTGAAGTTGCAAAATGGCGAGTTGGATGTTGGAGCGAGAAAAGAGGCCGTCGATTGGATTGAAAAGGTGAGTGTTCATTTCAGTTTTGGACCTCTCTGTACATACTTAGCTGTAAACTACTTGGATCGATTCCTATCCGCATACGATCTACCTAAAGGCAAAGCTTGGACAATGCAGTTACTTGCTGTGGCATGTATGTCCCTTGCAGCCAAATTGGAGGAGACTGAAGTCCCACTGTCTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTCGAAGCAAGAACCATTGAAAGAATGGAGCTTCTAGTCTTGACAACATTAGGGTGGAGAATGCAAGCAGTTACACCTTTCTCATTTATCGATCATTACCTCCACAGGATTCATGACGATCAACTCTCTATCAAAATGTTGATCGCCCGGTCTATTCATCTGCTCTTGAACATAATACAAGGGATAGATTTCTTGGAATTCAAACCTTCTGAAATTGCAGCAGCTGTGGCAATATCAGTAGCTGGGGAAGCTCAATCAGTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTATGAAGTGTCTTAAATTAATCAATGACATGTTAATCTGTGGTGGTGGGTCAATGAAGGACTCGAGAGTATCGATGTCAGAGCCCCGGAGCCCGAGCGGAGTGTTGGACGTGACGTGTTTAAGCTATAAAAGCAATGATACAGCAGTTGGATCATGTGCAAATTCTTCTCATCATAACAGCTCAGAGGCTACAAAGAGGAGGAGATTGAACAGACCCTGTGAAGTGGAGCTATAG | 1074 | 44.13 | MAPSFDLAVSNLLCAEENCIFDNNDGDDETVVEEFVMAPYYLRTGRNRNYRRGGGGEGLPFMSDECLIEMVEKEAQHLPVDGYLVKLQNGELDVGARKEAVDWIEKVSVHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLHRIHDDQLSIKMLIARSIHLLLNIIQGIDFLEFKPSEIAAAVAISVAGEAQSVDPERAIPLLIQQLQMERVMKCLKLINDMLICGGGSMKDSRVSMSEPRSPSGVLDVTCLSYKSNDTAVGSCANSSHHNSSEATKRRRLNRPCEVEL | 357 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 26613276 | 26616410 | + | MELO3C011068.2.1 | Cme03g01823 | 323834 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme03g01823 | 357 | SMART | cyclin_7 | 102 | 190 | IPR013763 | - | |
| Cme03g01823 | 357 | Pfam | Cyclin, C-terminal domain | 199 | 292 | IPR004367 | - | |
| Cme03g01823 | 357 | Pfam | Cyclin, N-terminal domain | 70 | 196 | IPR006671 | - | |
| Cme03g01823 | 357 | SMART | Cyclin_C_2 | 199 | 323 | IPR004367 | - | |
| Cme03g01823 | 357 | MobiDBLite | consensus disorder prediction | 331 | 351 | - | - | |
| Cme03g01823 | 357 | Gene3D | - | 80 | 197 | - | - | |
| Cme03g01823 | 357 | SUPERFAMILY | Cyclin-like | 62 | 196 | IPR036915 | - | |
| Cme03g01823 | 357 | CDD | CYCLIN | 97 | 189 | IPR013763 | - | |
| Cme03g01823 | 357 | PANTHER | CARBOXY-TERMINAL DOMAIN CYCLIN | 1 | 349 | - | - | |
| Cme03g01823 | 357 | Gene3D | - | 69 | 283 | - | - | |
| Cme03g01823 | 357 | PANTHER | CYCLINS | 1 | 349 | IPR039361 | - | |
| Cme03g01823 | 357 | SUPERFAMILY | Cyclin-like | 182 | 292 | IPR036915 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g01823 | Cme-Chr3:26613276 | Cme07g02202 | Cme-Chr7:26268922 | 2.33E-60 | dispersed | |
| Cme11g01106 | Cme-Chr11:16360182 | Cme03g01823 | Cme-Chr3:26613276 | 5.50E-36 | dispersed | |
| Cme10g00495 | Cme-Chr10:3184437 | Cme03g01823 | Cme-Chr3:26613276 | 5.45E-46 | transposed | |
| Cme03g01823 | Cme-Chr3:26613276 | Cme08g00737 | Cme-Chr8:4915013 | 3.01E-99 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme03g01823 | K18810 | - | csv:101216206 | 664.07 |