Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01826 ACGCTTTTGCATGCCCCCAATCAAATTATTTTCCCTCTACTTCGATTCATTTCCTCTGCTTCTTCATGTTTTGAAGCTTTGCCTTTTTTCACACTCTTCTTCATTCTAAACTCCCACTCCCTTCTTTTTCAAATGGATTTCTTCTTTTCACCCTGTACTTCTGACTCTGCCATTTCCATCTGCGGCGGCGGTGGCGGCTCCGATTCTCTTTCCTCCCATCTCAAAATCAAACCCAAAAAGCCTTTTCAAATCAGACAATTTTCTTATTCCGATCTTCTCTCTTCCACTAATTCATTCTCTCCCGACTGTTTTTTAGGCAAAGGCAGCCACGGCGCCGTTTACAAGGCCGTTCTCGACGGCGGTAAGCTCGTCGCCGCTGTTAAACGTACCAAATTCACAAACCCATCTCCTAGTTTTCACTACAACTCTTGCCAATTGCCCAATCACACTCCCGCCGAGAACGAAATCGAGATCCTTTCCCGGCTTCGAAACCCCAGAATCGTGAATCTTATTGGGTTTTGTGCGGATTCAAAGGACGAGAAATTGCTTGTCGTTGAGTTCATGCCCAATGGCTCTCTTTACGATCTGCTCCATTCCCAATCTAGACCGCCCGGTTGGACTCGCCGACTCCGGTTTGCGTTACAGGTCGCAAAAGCGGTTCGAGCCCTTCACACGTCCAACCCGCCGGTTATTCATAGAGATATTAAGTCGTCTAACGTTTTGATCGACGGTAACTTCAACGCGCGTCTTGGGGATTTTGGTTTAGCGTTGAGAGGACACGTGGAAGATGTGCGAGTGAGATGTACGCCCCCGGCTGGCACGTTGGGTTATCTCGATCCCGGGTATCTCGCACCGGCCGATCTGAGTGTGAAGAGCGACGTTTTCAGTTTTGGGATTTTGCTTTTGGAGATCCTCAGTGGTCGAAATGCTATCGATGTTCACCACAGTCCGCCGTCGGTCGTTGACTGGGCCTTGCCGATGATCAATCATAGTAATTTCGATGGCCTTTGCGACCCACGAATCGGGTCTCCGACTGACCCGGCGGTCACTCGTTGTTTGGGAGTTCTGGCCGCTAAGTGTGTCCGGTCTCCCGTGCAGAAGCGGCCGGATATGGCGGAGGTGGTGGAGTGTTTGAAGGCAGCTAAGAAGAAGTTGCACGTGCCACCGATATGGAGCAATTTAAGGAGGCGGGAACGACACGTGGAGAATCTCCAGCCGTTGATTTCGAACTTTGATGAACCCGACGGCTGTGATGAGCCGATGAGGGTTTGCCGGATGGGTAGCCGGAGGAATCGAAAAGTGTCGAATGTTTCGAGTACAGAGTATAGAATTAAGACGAATGGGCGAGTGGTTAGATCGAGATCGATGGGTTCGGTGGAAATTAATTCCAATGTCGGCGGAAATTATTACTCTTCGTTAAGTGGCCGACGTAAACACAGCGGCGTTGCAATGAAAATTCCGACTATGAAACTTAGCAAATCGAGGTCGGTGGGAGTGTCAGAGAATCCGAAGTTTGTTGAATGTAATCGGAGGGCGGGCGCGTTTTTGCCGGAAATTGAAATGTCGAAATTGATGATTGATTGTGAATCTAAATCTTAG 1599 49.16 TLLHAPNQIIFPLLRFISSASSCFEALPFFTLFFILNSHSLLFQMDFFFSPCTSDSAISICGGGGGSDSLSSHLKIKPKKPFQIRQFSYSDLLSSTNSFSPDCFLGKGSHGAVYKAVLDGGKLVAAVKRTKFTNPSPSFHYNSCQLPNHTPAENEIEILSRLRNPRIVNLIGFCADSKDEKLLVVEFMPNGSLYDLLHSQSRPPGWTRRLRFALQVAKAVRALHTSNPPVIHRDIKSSNVLIDGNFNARLGDFGLALRGHVEDVRVRCTPPAGTLGYLDPGYLAPADLSVKSDVFSFGILLLEILSGRNAIDVHHSPPSVVDWALPMINHSNFDGLCDPRIGSPTDPAVTRCLGVLAAKCVRSPVQKRPDMAEVVECLKAAKKKLHVPPIWSNLRRRERHVENLQPLISNFDEPDGCDEPMRVCRMGSRRNRKVSNVSSTEYRIKTNGRVVRSRSMGSVEINSNVGGNYYSSLSGRRKHSGVAMKIPTMKLSKSRSVGVSENPKFVECNRRAGAFLPEIEMSKLMIDCESKS 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26647838 26649568 + MELO3C011065.2.1 Cme03g01826 323837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01826 532 Gene3D Transferase(Phosphotransferase) domain 1 188 389 - -
Cme03g01826 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Cme03g01826 532 PANTHER OS01G0750732 PROTEIN 49 515 - -
Cme03g01826 532 SUPERFAMILY Protein kinase-like (PK-like) 79 378 IPR011009 -
Cme03g01826 532 ProSiteProfiles Protein kinase domain profile. 99 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01826 532 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Cme03g01826 532 SMART serkin_6 99 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01826 532 Pfam Protein kinase domain 105 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01826 532 Gene3D Phosphorylase Kinase; domain 1 68 187 - -
Cme03g01826 532 PANTHER - 49 515 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01826 - - - csv:101208276 925.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01826 Cme-Chr3:26647838 Cme04g01614 Cme-Chr4:23352235 4.38E-126 dispersed
Cme03g01826 Cme-Chr3:26647838 Cme10g00446 Cme-Chr10:2831318 4.78E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g480 . . Bda01g00901 . . . . . . . . . . . . . . Bhi04g00811 . . . . . Lcy13g1503 Cla08g01146 . . . . . . . . Cone17ag1191 . . . . Cme03g01826 . . Bda11g00788 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01004 Csa02g02188 Chy03g01329 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012718 2 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 1 1 0 1 0 0 0 0 1 1 1 0 1 16
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64764 PF00069 Pkinase 3.60E-36 CL0016 Cme PK