Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01827 ATGGAATTCGACGAGGAGAACGACGAGGAAATAATGGATGAGATGCCAATCGCCACTCACCACTGCGACTCGCTCACTAACTCAGCTTCAACTCGGCCAAAACCCGGAGAAGGTGCATCAACAGCGAGAAAAACCAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCGATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGACGCACTAAAATGCGCCGCCTGTAACTGTCACCGAAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCAACAACAACAACAAATTTGTCCATATCGTGGACCCACACCACACCCATCTGCTTACGTGTACATGAGGGGGGCCCCAGTTCAACAAAGGGCGTTGGCGTTGCCGGCAGCGGCGGGGGGGAGGGAAGAGGACGACACGTCGAATCCGAGTAGTAGCGGTGGCGGGGGCGGAGGAAGTGGGAGTGGGTTGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTTCAGAGCAAAAGGAGAAAATGTTAGAGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAGCACGATGAGGCTGATGTGGAACGATTCTGTATGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGAAAACGAACGTGGTAAGATGGAAGTATATGGAAGTAGGGTTTAA 717 50.07 MEFDEENDEEIMDEMPIATHHCDSLTNSASTRPKPGEGASTARKTSSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYQQQQQICPYRGPTPHPSAYVYMRGAPVQQRALALPAAAGGREEDDTSNPSSSGGGGGGSGSGLLLKKRFRTKFSSEQKEKMLEFAEKVGWTIQKHDEADVERFCMETGVRRQVLKENERGKMEVYGSRV 238
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 26656696 26658778 + MELO3C011064.2.1 Cme03g01827 323838
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01827 238 Gene3D - 159 231 - -
Cme03g01827 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 31 224 - -
Cme03g01827 238 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 50 99 IPR006456 -
Cme03g01827 238 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 49 99 IPR006456 -
Cme03g01827 238 MobiDBLite consensus disorder prediction 142 172 - -
Cme03g01827 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 224 - -
Cme03g01827 238 SUPERFAMILY Homeodomain-like 161 224 IPR009057 -
Cme03g01827 238 MobiDBLite consensus disorder prediction 23 45 - -
Cme03g01827 238 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 175 224 IPR006455 -
Cme03g01827 238 Pfam ZF-HD protein dimerisation region 48 100 IPR006456 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01827 Cme-Chr3:26656696 Cme08g00852 Cme-Chr8:5615815 2.64E-53 dispersed
Cme12g01993 Cme-Chr12:25643257 Cme03g01827 Cme-Chr3:26656696 3.79E-24 dispersed
Cme03g01827 Cme-Chr3:26656696 Cme08g00739 Cme-Chr8:4928339 2.85E-58 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41069 PF04770 ZF-HD_dimer 2.00E-30 No_clan Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01827 - - csv:101216697 402.519