Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01827 ATGGAATTCGACGAGGAGAACGACGAGGAAATAATGGATGAGATGCCAATCGCCACTCACCACTGCGACTCGCTCACTAACTCAGCTTCAACTCGGCCAAAACCCGGAGAAGGTGCATCAACAGCGAGAAAAACCAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCGATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGACGCACTAAAATGCGCCGCCTGTAACTGTCACCGAAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCAACAACAACAACAAATTTGTCCATATCGTGGACCCACACCACACCCATCTGCTTACGTGTACATGAGGGGGGCCCCAGTTCAACAAAGGGCGTTGGCGTTGCCGGCAGCGGCGGGGGGGAGGGAAGAGGACGACACGTCGAATCCGAGTAGTAGCGGTGGCGGGGGCGGAGGAAGTGGGAGTGGGTTGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTTCAGAGCAAAAGGAGAAAATGTTAGAGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAGCACGATGAGGCTGATGTGGAACGATTCTGTATGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGAAAACGAACGTGGTAAGATGGAAGTATATGGAAGTAGGGTTTAA 717 50.07 MEFDEENDEEIMDEMPIATHHCDSLTNSASTRPKPGEGASTARKTSSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYQQQQQICPYRGPTPHPSAYVYMRGAPVQQRALALPAAAGGREEDDTSNPSSSGGGGGGSGSGLLLKKRFRTKFSSEQKEKMLEFAEKVGWTIQKHDEADVERFCMETGVRRQVLKENERGKMEVYGSRV 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26656696 26658778 + MELO3C011064.2.1 Cme03g01827 323838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01827 238 Gene3D - 159 231 - -
Cme03g01827 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 31 224 - -
Cme03g01827 238 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 50 99 IPR006456 -
Cme03g01827 238 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 49 99 IPR006456 -
Cme03g01827 238 MobiDBLite consensus disorder prediction 142 172 - -
Cme03g01827 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 224 - -
Cme03g01827 238 SUPERFAMILY Homeodomain-like 161 224 IPR009057 -
Cme03g01827 238 MobiDBLite consensus disorder prediction 23 45 - -
Cme03g01827 238 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 175 224 IPR006455 -
Cme03g01827 238 Pfam ZF-HD protein dimerisation region 48 100 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01827 - - - csv:101216697 402.519
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01827 Cme-Chr3:26656696 Cme08g00852 Cme-Chr8:5615815 2.64E-53 dispersed
Cme12g01993 Cme-Chr12:25643257 Cme03g01827 Cme-Chr3:26656696 3.79E-24 dispersed
Cme03g01827 Cme-Chr3:26656696 Cme08g00739 Cme-Chr8:4928339 2.85E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01827 . 46 234 ZF-HD Transcription Factor Family AT4G24660 50.3 5.4e-43 171.4
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT2G02540 55.6 1.1e-51 200.7
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT1G14440 54.5 7.1e-54 208.0
Cme04g01977 . 22 298 ZF-HD Transcription Factor Family AT5G15210 51.6 2.2e-51 199.5
Cme09g00278 . 66 263 ZF-HD Transcription Factor Family AT5G15210 60.1 4.7e-46 181.8
Cme04g01977 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.0 2.9e-63 239.2
Cme09g00278 . 16 265 ZF-HD Transcription Factor Family AT3G28920 59.8 2.9e-55 212.6
Cme04g01977 . 30 267 ZF-HD Transcription Factor Family AT5G39760 58.4 3.0e-50 196.1
Cme09g00278 . 24 276 ZF-HD Transcription Factor Family AT5G39760 53.7 6.2e-48 188.3
Cme09g00278 . 65 266 ZF-HD Transcription Factor Family AT1G69600 51.0 6.5e-47 184.5
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT2G02540 55.6 1.1e-51 200.7
Cme03g01827 . 46 234 ZF-HD Transcription Factor Family AT4G24660 50.3 5.4e-43 171.4
Cme04g01977 . 30 267 ZF-HD Transcription Factor Family AT5G39760 58.4 3.0e-50 196.1
Cme09g00278 . 24 276 ZF-HD Transcription Factor Family AT5G39760 53.7 6.2e-48 188.3
Cme09g00278 . 65 266 ZF-HD Transcription Factor Family AT1G69600 51.0 6.5e-47 184.5
Cme04g01977 . 22 298 ZF-HD Transcription Factor Family AT5G15210 51.6 2.2e-51 199.5
Cme09g00278 . 66 263 ZF-HD Transcription Factor Family AT5G15210 60.1 4.7e-46 181.8
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT1G14440 54.5 7.1e-54 208.0
Cme04g01977 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.0 2.9e-63 239.2
Cme09g00278 . 16 265 ZF-HD Transcription Factor Family AT3G28920 59.8 2.9e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41069 PF04770 ZF-HD_dimer 2.00E-30 No_clan Cme TF