Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme03g01827 | ATGGAATTCGACGAGGAGAACGACGAGGAAATAATGGATGAGATGCCAATCGCCACTCACCACTGCGACTCGCTCACTAACTCAGCTTCAACTCGGCCAAAACCCGGAGAAGGTGCATCAACAGCGAGAAAAACCAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCGATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGACGCACTAAAATGCGCCGCCTGTAACTGTCACCGAAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCAACAACAACAACAAATTTGTCCATATCGTGGACCCACACCACACCCATCTGCTTACGTGTACATGAGGGGGGCCCCAGTTCAACAAAGGGCGTTGGCGTTGCCGGCAGCGGCGGGGGGGAGGGAAGAGGACGACACGTCGAATCCGAGTAGTAGCGGTGGCGGGGGCGGAGGAAGTGGGAGTGGGTTGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTTCAGAGCAAAAGGAGAAAATGTTAGAGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAGCACGATGAGGCTGATGTGGAACGATTCTGTATGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGAAAACGAACGTGGTAAGATGGAAGTATATGGAAGTAGGGTTTAA | 717 | 50.07 | MEFDEENDEEIMDEMPIATHHCDSLTNSASTRPKPGEGASTARKTSSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYQQQQQICPYRGPTPHPSAYVYMRGAPVQQRALALPAAAGGREEDDTSNPSSSGGGGGGSGSGLLLKKRFRTKFSSEQKEKMLEFAEKVGWTIQKHDEADVERFCMETGVRRQVLKENERGKMEVYGSRV | 238 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 26656696 | 26658778 | + | MELO3C011064.2.1 | Cme03g01827 | 323838 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme03g01827 | 238 | Gene3D | - | 159 | 231 | - | - | |
| Cme03g01827 | 238 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 1 | 31 | 224 | - | - | |
| Cme03g01827 | 238 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 50 | 99 | IPR006456 | - | |
| Cme03g01827 | 238 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 49 | 99 | IPR006456 | - | |
| Cme03g01827 | 238 | MobiDBLite | consensus disorder prediction | 142 | 172 | - | - | |
| Cme03g01827 | 238 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 31 | 224 | - | - | |
| Cme03g01827 | 238 | SUPERFAMILY | Homeodomain-like | 161 | 224 | IPR009057 | - | |
| Cme03g01827 | 238 | MobiDBLite | consensus disorder prediction | 23 | 45 | - | - | |
| Cme03g01827 | 238 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 175 | 224 | IPR006455 | - | |
| Cme03g01827 | 238 | Pfam | ZF-HD protein dimerisation region | 48 | 100 | IPR006456 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g01827 | Cme-Chr3:26656696 | Cme08g00852 | Cme-Chr8:5615815 | 2.64E-53 | dispersed | |
| Cme12g01993 | Cme-Chr12:25643257 | Cme03g01827 | Cme-Chr3:26656696 | 3.79E-24 | dispersed | |
| Cme03g01827 | Cme-Chr3:26656696 | Cme08g00739 | Cme-Chr8:4928339 | 2.85E-58 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41069 | PF04770 | ZF-HD_dimer | 2.00E-30 | No_clan | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme03g01827 | - | - | csv:101216697 | 402.519 |