Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01833 ATGAAACGCCTCGGCTGGCTAGGGCTGTGCCGGCGGCAATTACTTTCATCTGAAGGCGTAGGGCCGTCCATTGACTTACGACTCTCGCACGGAAAAGTTTCATCGTTACGTCAGTTTTTTACATATGCTCGAGCGTCGCAAGCATTTCCTTCTGCCGTAGGGAACGGTCCTGACTTTTCCACAGCATTTCCGGCGAGTAGACGTTTCATACATCGCACAGGATCATGTCGTTCTATTGAACGAGATTACTATGAAATTCTGGGGGTTCAACACAATGCCAGTCGAGAAGAGATTAAAAAGGCATATCATGCGTTGGCGAAAAAGTACCATCCGGATGCAAATAAAAACAATCCTTCTGCCAAAAAGAAATTTCAGGAGATAAGAGAAGCCTATGAGACTCTGCAGGATTCTGAGAAGAGATCCCAATATGACCAGAGGCGTAGTGGAGAGTTTGAGAATGTAGGGTTTGGTGCTGGTGATGCGGACGGGTTTAGCTATACTTATCGTACCCATTTTTCTGACTCATTTCAAAAGATTTTCTCTGAGATCTTTGAACATGAGACCAGCCGTCGTCCCTCAGATATTCAGGTTGACCTGCTGTTATCTTTTGCTGAAGCTGCGAAAGGATGCACTAAGGATTTGTCCTTTGATGCTCTGATGGCCGTGGCTATCCAGTACATGCAACGAAAAGAAGCTGCCCTACCTGCAGAGGTTACTATTCCTCCATTTACATCGACGTGCACTACTTGCCGAGGATCAGGTCAAATCATTGAGGAATCATGTGGGCAATGCAGGGGAACGGGGGTTGTGGAGGGTGTCATGAAGGTTACAGTTACTATACCTGCTGGTTGGTCTTCACCACTTGATTTTGTTTATCATGGGTTGATTCTGGAGATACTATTTGTGTATCAAAAGCTGGTTGCTGAAGATCGTGTCTTTAAGAGAGAAGGTGTGGATATTTATGTGGATTCTAATATCAGCTTTACTCAAGCTATTCTTGGGGGCAAGGTTGAGGTTCCAACATTGTCAGGCAGGATGCAAATAGAATCAACACTGCACTTGCCAAGTGAATTGGATAAAGACAGTGCTAAAGTGATCTGGAGGTGTAGAGTTAGATCCTTCTTATGTACTCTTTGGCTAGAAATAACTCATTTGGCATCACTTCGG 1167 44.82 MKRLGWLGLCRRQLLSSEGVGPSIDLRLSHGKVSSLRQFFTYARASQAFPSAVGNGPDFSTAFPASRRFIHRTGSCRSIERDYYEILGVQHNASREEIKKAYHALAKKYHPDANKNNPSAKKKFQEIREAYETLQDSEKRSQYDQRRSGEFENVGFGAGDADGFSYTYRTHFSDSFQKIFSEIFEHETSRRPSDIQVDLLLSFAEAAKGCTKDLSFDALMAVAIQYMQRKEAALPAEVTIPPFTSTCTTCRGSGQIIEESCGQCRGTGVVEGVMKVTVTIPAGWSSPLDFVYHGLILEILFVYQKLVAEDRVFKREGVDIYVDSNISFTQAILGGKVEVPTLSGRMQIESTLHLPSELDKDSAKVIWRCRVRSFLCTLWLEITHLASLR 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26680053 26689781 + MELO3C011058.2.1 Cme03g01833 323844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01833 389 CDD DnaJ 82 136 IPR001623 -
Cme03g01833 389 Gene3D DnaJ domain 79 193 IPR036869 -
Cme03g01833 389 CDD DnaJ_zf 243 268 IPR001305 GO:0031072|GO:0051082
Cme03g01833 389 Gene3D - 242 268 - -
Cme03g01833 389 Gene3D - 308 366 - -
Cme03g01833 389 Pfam DnaJ domain 82 144 IPR001623 -
Cme03g01833 389 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
Cme03g01833 389 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 50 349 - -
Cme03g01833 389 PRINTS DnaJ domain signature 84 102 IPR001623 -
Cme03g01833 389 PRINTS DnaJ domain signature 102 117 IPR001623 -
Cme03g01833 389 PRINTS DnaJ domain signature 119 139 IPR001623 -
Cme03g01833 389 PRINTS DnaJ domain signature 139 158 IPR001623 -
Cme03g01833 389 SUPERFAMILY Chaperone J-domain 81 173 IPR036869 -
Cme03g01833 389 Gene3D - 269 287 - -
Cme03g01833 389 SUPERFAMILY HSP40/DnaJ peptide-binding domain 312 347 IPR008971 GO:0006457|GO:0051082
Cme03g01833 389 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 293 IPR008971 GO:0006457|GO:0051082
Cme03g01833 389 Pfam DnaJ C terminal domain 195 349 IPR002939 -
Cme03g01833 389 ProSiteProfiles dnaJ domain profile. 82 147 IPR001623 -
Cme03g01833 389 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 50 349 - -
Cme03g01833 389 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 242 270 IPR036410 -
Cme03g01833 389 SMART dnaj_3 81 139 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01833 - - - csv:101208756 545.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01833 Cme-Chr3:26680053 Cme07g01092 Cme-Chr7:13751397 1.05E-30 dispersed
Cme03g01833 Cme-Chr3:26680053 Cme01g00483 Cme-Chr1:3487893 3.05E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30