Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01836 ATGGGGAGTGTTTCCTTTTCGAATCAATCCCACCCTTTCTTATCCAAATTTTGGGTTGAAACTCAGAAGCTATGGCTAATCGTCGGCCCTTCCATTTTCAGCCGTGTCTCCGCCTTCACCATGAACATCATCACTCAAGCTTTCTCTGGCCGTTTAGGTGACGTTCAACTTGCTTCCATTTCCATCGCCAACACTGTAATTGTCGGTTTCAACTTCGGCCTCTTATTAGGGATGGCTAGTGCATTAGAGACACTATGTGGACAAGCATATGGAGCAAGGAGATATCATATGTTAGGAATTTACTTGCAACGATCGTGGATAGTGCTTTCCCTTTGTTGTTTCTTGTTACTTCCTTTTTATTTTTACGCCACACCAGTTTTGAAACTGCTTGGCCAAGATGATGATGTAGCAGAGCAATCAGGGGTAGTAGCGATTTGGTTAATACCGCTTCATTTCAGCTTTGCTTTTCAGTTTCCATTGCAGAGGTTTTTGCAATCTCAATTGAAAACCCAAGTCATTGCTTGGGTTTCTTTTATAGGATTAGCTACCAATATATTGGCTTGTTGGGTTTTTATATATGTTTGGGAATTTGGGGTAATTGGGGCAGCCATAGCTTTAGATATAGCTTGGTGGGTTTTGGTTCTTGGATTGTATACGTATACAGTTGGTGGTTGGTGCCCTTTAACTTGGACTGGCTTCTCTAGTCAAGCCTTCCATGGCCTTTGGGATTTCACTAAGCTCTCCATTTCTGCTGGCCTCATGCTCTGCTCGGAGAATTGGTATTACAGAATACTTGTGCTGATGACGGGAAATTTAAAGAATGCTACTATAGCTGTAGATGCATTGTCCATATGCATGAGCATCAATGGATGGGAACTGATGATTCCTTTAGCATTCTTTGCTGGCGTTGGAGTTAGAGTGGCAAACGAGCTTGGTGCTGGGAATGGGAATGCAGCCAAATTTGCTACAATTGTATCGGTGGTGCAATCAACAGTGATTGGAGCTGTGATATGTGTTGTTATAATGATATTTCATGATAAGATAGCTTTTATCTTCACAGACAGCAGTAGTGTTGTGGGAGCTGTTGATACACTCTCAAGCTTGCTAGCAGTCACCATTCTCTTGAACAGTATCCAACCCGTTCTTTCAGGTGTGGCTGTTGGATCAGGTTGGCAATCTTGGGTTGCATATATAAATATTGGCTGCTATTATCTTATTGGTCTCCCACTTGGTTTCGTCATGGAATGGGTTTTCCACTCTGGTGTGCTGGGGATTTGGGGTGGAATGATATTTGGTGGCACTGCAGTTCAAACCATGATATTAGTGATAATCACAATGAGAACTAATTGGGAAGTAGAGGCCCAGAAAGCACAAGAACATGTGGAAGAATGGTCCAGTCCTCAAGAAATCGAGAAGCCTCTTTTAGCCTAA 1431 42.63 MGSVSFSNQSHPFLSKFWVETQKLWLIVGPSIFSRVSAFTMNIITQAFSGRLGDVQLASISIANTVIVGFNFGLLLGMASALETLCGQAYGARRYHMLGIYLQRSWIVLSLCCFLLLPFYFYATPVLKLLGQDDDVAEQSGVVAIWLIPLHFSFAFQFPLQRFLQSQLKTQVIAWVSFIGLATNILACWVFIYVWEFGVIGAAIALDIAWWVLVLGLYTYTVGGWCPLTWTGFSSQAFHGLWDFTKLSISAGLMLCSENWYYRILVLMTGNLKNATIAVDALSICMSINGWELMIPLAFFAGVGVRVANELGAGNGNAAKFATIVSVVQSTVIGAVICVVIMIFHDKIAFIFTDSSSVVGAVDTLSSLLAVTILLNSIQPVLSGVAVGSGWQSWVAYINIGCYYLIGLPLGFVMEWVFHSGVLGIWGGMIFGGTAVQTMILVIITMRTNWEVEAQKAQEHVEEWSSPQEIEKPLLA 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26717567 26720091 + MELO3C011055.2.1 Cme03g01836 323847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01836 476 PANTHER MULTIDRUG RESISTANCE PROTEIN 8 461 - -
Cme03g01836 476 PANTHER PROTEIN DETOXIFICATION 8 461 - -
Cme03g01836 476 CDD MATE_eukaryotic 20 456 IPR045069 GO:0042910|GO:1990961
Cme03g01836 476 Pfam MatE 253 413 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cme03g01836 476 Pfam MatE 30 190 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cme03g01836 476 TIGRFAM matE: MATE efflux family protein 30 426 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01836 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101218581 907.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01836 Cme-Chr3:26717567 Cme08g00743 Cme-Chr8:4958082 0 dispersed
Cme02g00644 Cme-Chr2:7530260 Cme03g01836 Cme-Chr3:26717567 3.93E-18 transposed
Cme07g01112 Cme-Chr7:14104603 Cme03g01836 Cme-Chr3:26717567 0 transposed
Cme09g01925 Cme-Chr9:23332307 Cme03g01836 Cme-Chr3:26717567 1.99E-115 transposed
Cme10g00564 Cme-Chr10:3596028 Cme03g01836 Cme-Chr3:26717567 3.40E-54 transposed
Cme11g02172 Cme-Chr11:29098291 Cme03g01836 Cme-Chr3:26717567 9.14E-145 transposed
Cme12g01020 Cme-Chr12:17829533 Cme03g01836 Cme-Chr3:26717567 3.81E-28 transposed
Cme12g01426 Cme-Chr12:22040878 Cme03g01836 Cme-Chr3:26717567 2.54E-121 transposed
Cme12g01768 Cme-Chr12:24296590 Cme03g01836 Cme-Chr3:26717567 1.41E-143 transposed
Cme03g01836 Cme-Chr3:26717567 Cme08g00742 Cme-Chr8:4951391 2.18E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g464 . . . . . . . . Cmo05g00546 . . . . . Sed08g0776 . . Bhi04g00794 Tan06g0276 Cmetu02g1119 . Hepe10g0465 . Lcy13g1529 Cla08g01136 Cam08g1594 Cec08g1164 Cco08g1291 Clacu08g1294 . Cre08g1076 Cone6ag1543 . Cone8ag0208 . . . . Cme03g01836 Blo17g00108 . . . . . . . . . . . Cma05g00517 Car05g00469 . Cpe11g00458 . . . . . . . . . . . . . . . Lsi08g00993 Csa02g02178 Chy03g01339 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000367 5 3 5 4 4 4 5 4 4 4 4 4 6 5 4 4 4 5 5 4 4 4 4 6 6 3 4 3 6 2 129