Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01849 ATGAACAACGGCTCCAAAATCTCACCTCTAACCCGAGGAAAAGCAATCAGATGTCGAGCTGCGGTTTGCAGACAACCGGGAGAGCCACTTGTTATAGAGGAAATTGAAGTTGATCCTCCAAAAATTGGGGAGGTTCGAATCAAAATTCTTTGCACTTCCCTCTGTCATTCTGACGTTACCGTCTGGAATATGAGACAAGGACTTTTCTCATTCCCCATCATTTTTGGACACGAAGCTGTCGGAATCGTTGAAAGCATAGGAGAAGAAGTGGAGGAAGTGAAAGAAGGGGAAATGGTGTTACCTGTATATCAATCAAATTGCAAAGAGTGTAAAGAATGCAAGAATTGGAGGACCAACAAATGCAGTGCCTTTGGGGACAAAATTGGAATGGGAATGCCAAGAGATGGCACAAGCAGGTTTAAGGATTTAAATGGACAGCCTTTGAACCATTTCTTATATGTTTCAAGCTTTTCTGAGTATACAGTTGTTGATGTTCACAACCTTGTTCCAATCAATCCAAAGCTTCCTATAGACAAGGCCGCCTTGTTTGGCTGTGGAGTCCCTACTGGGATTGGAGCTGCGTGGAACGTCGCTGACGTAGACGAGGGTTCCACCGTGGCTATCTTTGGTCTTGGTACTGTTGGACTTGCAGTTGCAGAAGGATCAAAACATCGCAAAGCTTCAAAGATCATTGGCATCGATTCAAATCCTAACAAATTTGAGATCGCAAAGAAGTTTGGGGTTACTAATTTTATCAACCCAGCTACTTGTGGAGATAAGGCAATTCATGAAGTTATTAAGGAAGAAACTGACGGGGGAGCAGATTACTGCTTTGAGTGTGTTGGGTTGGCTTCCCTCATGGAAGAAGCTATCAAAAGTAGTAGAGAGGGATGGGGAAAGGCAGTGATATTGGGAGTGGAGAAAGATGGAAGGCCATTCACAGTGAACTCATTTGAAATAATAAATGGGATCACCATCACAGGATCTCTTTTTGGAGGTCTTAAGCCTAAATCCGATCTTCCAATGCTTATCGACAAGTATTTACACAAAGAACTTTACTTGGATGGGTTGATATCACATGAAGTTGAGTTTGAGGACATCAACAAAGCATTTGATTTGCTTATCTATGGAAGATCACTTCGTTGCCTCATTTGGATTGATCATTGA 1167 42.42 MNNGSKISPLTRGKAIRCRAAVCRQPGEPLVIEEIEVDPPKIGEVRIKILCTSLCHSDVTVWNMRQGLFSFPIIFGHEAVGIVESIGEEVEEVKEGEMVLPVYQSNCKECKECKNWRTNKCSAFGDKIGMGMPRDGTSRFKDLNGQPLNHFLYVSSFSEYTVVDVHNLVPINPKLPIDKAALFGCGVPTGIGAAWNVADVDEGSTVAIFGLGTVGLAVAEGSKHRKASKIIGIDSNPNKFEIAKKFGVTNFINPATCGDKAIHEVIKEETDGGADYCFECVGLASLMEEAIKSSREGWGKAVILGVEKDGRPFTVNSFEIINGITITGSLFGGLKPKSDLPMLIDKYLHKELYLDGLISHEVEFEDINKAFDLLIYGRSLRCLIWIDH 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26790940 26793756 - MELO3C011043.2.1 Cme03g01849 323860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01849 388 Pfam Zinc-binding dehydrogenase 214 339 IPR013149 -
Cme03g01849 388 Pfam Alcohol dehydrogenase GroES-like domain 43 171 IPR013154 -
Cme03g01849 388 SUPERFAMILY GroES-like 11 195 IPR011032 -
Cme03g01849 388 Gene3D - 190 329 - -
Cme03g01849 388 PANTHER ALCOHOL DEHYDROGENASE 10 386 - -
Cme03g01849 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 175 348 IPR036291 -
Cme03g01849 388 Gene3D - 21 381 - -
Cme03g01849 388 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 76 90 IPR002328 GO:0008270|GO:0016491
Cme03g01849 388 SUPERFAMILY GroES-like 337 385 IPR011032 -
Cme03g01849 388 PANTHER ALCOHOL DEHYDROGENASE-LIKE 2 10 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01849 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - csv:101209737 679.093
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01365 Cme-Chr3:23139200 Cme03g01849 Cme-Chr3:26790940 1.69E-160 dispersed
Cme03g01366 Cme-Chr3:23152438 Cme03g01849 Cme-Chr3:26790940 9.62E-123 dispersed
Cme03g01849 Cme-Chr3:26790940 Cme11g02411 Cme-Chr11:30937740 1.93E-130 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g444 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01126 Cam08g1582 Cec08g1152 Cco08g1279 Clacu08g1283 . Cre08g1065 . . . . . . . Cme03g01849 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00983 Csa02g02165 Chy03g01352 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84