Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01857 ATGGCTTCCTTCACTTTTGTTATTTCATCAATGATTCGCTTCTTCATCGCCATCTCCCTCTTCCAAATCTCCGCATCGCGTATGCTAAGCGAGTTCATTCCCGACCAAACCCAGTCTCTTAAATATCACAATGGTGTTCTTCTCTCCGGCAAAATCAGCGTCAATCTTATTTGGTATGGTAAATTTAAGCCTTCTCAAAAAGCAATCGTCTCCGATTTCATCAGCTCTCTCTCTTCCTCTCGTCCTCAAATCACCGAACCATCGGTTTCCACTTGGTGGAAACTAACGGAGAAGTATTACAAGAAGAAATCGAGTCCCCTGTTTCTCAATCTCGGCAAGCAAATCTTGGATGAAAATTACTCGTTGGGGAAATCACTAACCAACAAAAAAATCCTTCAACTGGCTTCAAAGGGTGAGCAAAGAAACGCCATTAATGTCGTTTTAACAGCTTCTGATGTGACTGTTGATGGGTTCTGTATGAGCCGTTGTGGAACTCATGGGTTTGGTTCTGCCGTCCGCCGTGGCAGCGCTGGAGTCAAAGGGAAAAATTATAAATTTGCTTACATTTGGGTTGGAAATTCCGAGACGCAATGTCCTGGACATTGTGCTTGGCCATTTCATCAGCCGATGTACGGACCTCAATCGCCACCATTGATTGCGCCTAACGGCGATATGGGAATGGACGGAATGATTATTAACCTTGCTAGTCTTTTGGCTGGAACTGCTACCAATCCGTTTGGTAACGGTTATTATCAAGGTCCGGCGGAGGCGCCATTAGAGGCGGCGTCTGCTTGTACTGGGGTTTATGGGAAAGGGGCTTACCCTGGTTACGCCGGGGAGTTGTTGACGGATTCAGTCACCGGCGGAAGCTATAATGCCAACGGCGGTAATGGACGGAAATACTTGCTTCCGGCTTTGTATGATCCTGCTACATCGGCTTGTTCCACTTTAGTTTAA 957 46.29 MASFTFVISSMIRFFIAISLFQISASRMLSEFIPDQTQSLKYHNGVLLSGKISVNLIWYGKFKPSQKAIVSDFISSLSSSRPQITEPSVSTWWKLTEKYYKKKSSPLFLNLGKQILDENYSLGKSLTNKKILQLASKGEQRNAINVVLTASDVTVDGFCMSRCGTHGFGSAVRRGSAGVKGKNYKFAYIWVGNSETQCPGHCAWPFHQPMYGPQSPPLIAPNGDMGMDGMIINLASLLAGTATNPFGNGYYQGPAEAPLEAASACTGVYGKGAYPGYAGELLTDSVTGGSYNANGGNGRKYLLPALYDPATSACSTLV 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26842331 26843813 - MELO3C011035.2.1 Cme03g01857 323868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01857 318 PANTHER PROTEIN EXORDIUM-RELATED 9 318 - -
Cme03g01857 318 Pfam Phosphate-induced protein 1 conserved region 40 317 IPR006766 -
Cme03g01857 318 PANTHER PROTEIN EXORDIUM-LIKE 5 9 318 IPR006766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01857 - - - csv:101221106 611.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01857 Cme-Chr3:26842331 Cme04g00277 Cme-Chr4:2185614 8.94E-142 dispersed
Cme03g01857 Cme-Chr3:26842331 Cme03g01858 Cme-Chr3:26853606 1.24E-116 tandem
Cme01g01146 Cme-Chr1:14746789 Cme03g01857 Cme-Chr3:26842331 2.93E-52 transposed
Cme06g00914 Cme-Chr6:6408908 Cme03g01857 Cme-Chr3:26842331 3.04E-52 transposed
Cme07g01271 Cme-Chr7:17615515 Cme03g01857 Cme-Chr3:26842331 2.18E-123 transposed
Cme11g01044 Cme-Chr11:15147342 Cme03g01857 Cme-Chr3:26842331 1.14E-50 transposed
Cme12g00932 Cme-Chr12:16329600 Cme03g01857 Cme-Chr3:26842331 3.11E-50 transposed
Cme03g01857 Cme-Chr3:26842331 Cme04g00276 Cme-Chr4:2180801 9.58E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g432 . . . . . . . Bma01g02608 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1328 Cone7ag1269 . . Lsi04g02243 . . Cme03g01857 . Blo18g00130 . Bda13g01397 . . . Bma02g00137 . . . Cma12g00164 . . . . Cpe02g00368 Bhi09g02446 Tan01g3798 Cmetu04g0771 . Hepe01g2135 Mch11g0673 . . . . . . . . . . Chy03g01359 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000841 2 4 5 3 3 1 3 3 2 3 3 3 2 3 3 2 3 5 3 2 3 3 3 4 4 4 3 1 4 1 88