Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01871 ATGGAGGACGGCAGTCCAGTGCAGTGTCCAAACACGGTGACTGTTCGGAGAAACCCTCACCGGAGAGCCAGAGCTACGCCGGCTGCCAAAGCAGCCGAATCCAATCTTACATCTGCCATTTCTTCATTTCCACTTCAAGAAATTCTCGCGATGGATGTCCCTCAAAACCCTAAAGACAATTCATCAGCATCGTCATCCGTTCAAACTTCTCTCTCCGAAAACCTGAAAGTGTACCTTAGAGTTCGACCTTTGCAGCTGAAGAATTTGAAGAAGTCCGGAAATCCTGGTGATCAAAATTCTTCGAGGTCCGGACATGTATGGCCTCAGAACCCCCAGAAGAAGAAAGCAGCGAAGGAGAAGAATGTTAAGAAGAAGAGCAATGAGGCTTGTATAACGATTAACGACGATCACTCAGTAACAGTCTGTCCGCCCATGGCATTACAAGAGACTAGGCGGAGCAAGTCTGAGGTTTACGAAGGATTTTCCCACGTGTTTTCTATGGAATCCTCTCAGGATGAGGTGTATGAGAGGATGGTTAGTCCTTTAGTGGAGGATTTTCTGAAGGGAAAAAGTGGAATGCTGACTGCACTTGGTCCGAGCGGATCGGGTAAGACCCATACTATTTTTGGCAGTCCAAGAGTTCCTGGAATGGTTCCACTGGCCCTTCAACATATTTTCAGGACAGAGTCGAGTGATTCCAAGACCTCCAGATCATATTATCTGTCAATCTTTGAAATATACTCAGAAAAAGGAAAAGGAGAAAAGATGTACGATCTTTCAGCAGATGGGGGTGAGTTAACTATGCAGCAGTTTACTATCAAGGGCCTTAAAGAGGTTTTAATTTCTAAAGCCGGAGAAGCTGAATCATTAGTGGCTTGTGCAATGACCAAGCGTGCCACTGCAATTACGAATGCAAATAGCACATCGAGCCGGTCCCAGTGCATCATTAATGTGCGTAGAGTTGCTAACCAAGATGAAGTTGAAGATGCATCGAACTGTGCCATCTTGACCATTGCTGATCTTGCTGGAGCTGAAAAAGAGAAAAGAACCGGGAATCAGGGTACAAGATTACTTGAAGCTAACTTCATCAATAATACATCAATGGTTTTTGGCTTGTGCCTAAGATCATTGTTTGAACACCAAAGGAATCCAAAGAAGCCACTGCAGAAGCATTTCCAGAACTCTTTGTTGACCAAGTACCTTCGAGATTACCTGGAAGGAAAGAAGCGAATGACCTTGATTTTAACTGTGAAAGCAGGAGAAGAAGATTATCTTGATACAACTTTCCTTCTCAGACAAGCTTCACCTTATATGAAAATCAAGTTCAACAATGTCGTGGAACCATCCAACACCAACAAGAGACAATTGCAAACGTTATGTACATTTGAGGAGCAGAAAAGAACAAAATATAGTGTTCCTGAAGCTTGTGTGAATGAAGGAAAGAGACATCACAAGGAAGACCTGCTTGCTCATGAAGAGCCTTCCGGTCATCCCAAAGGTACAGCCACAGAGTCTAGCCGTACAGAATTGGCTGGGATTGAAAGAAACCATTTGATTTTGCAGAATTTTTCTCAAGCCATATGGAAAACCTTGAAGCAGTATAGAGATAAACTAAAGAGTGCAGAGAATGAAAATCAAATTCTTCGAGAAGAAATTAGGCAGGAAAAGATGAGATATTTTGAGCTGGAAAAACAATGGCAAAGTACAAGATGTAGTACTTGCTCCAAGAAAGATTGTGCCGAAGCGGATTCATCTGTCGAAGTAGCTTCAAATTTTGAGTTAAATAGTGATTTGGAGGAGCACAGATTCAACAATTCTCACAAGATAATTGTGAACTCTTTCATCAAAGTGAAGGAATCTGAGGGAAAATCTCCAGAAAGACGTGGCTCCTCTCTCTATGAAGATATAAATTGTTGCTCAAAACTTGATGAAGTTAAAGAGGCACATACAGACAGTATAGACGAGACCACTCCTAGGAACAAGTGCAACACGGCGAAAAAACTTACATATGTGGAAGCAGATGATAGTTGTCCGACAACAAATCCTATAGCCTTTAGCACCCAGCAGTCCCATAAATTGGTGAAGCATGACAGCTGTTCATCGGTAGAGTTGGACAAACTCAGTGAGCAAGAGGAATCTACCTCAGTCGAATCACATTTACAAATAGGCTCCAATATTCACTGCGATGCTCATGCATGTGAAACTCAACTTGTACCTGATACATCATTAAATCAATCAACTTCAGAGGAGTCCGATAGGGATTCAGGTGCCTTGAATGAAGACCAGGAACTCTTGGGGGAATTTCCGGATTCTCAACATGTACCTCCCACCGAGGATGTTGAATCTTATCAAGAACAAGAGCACAAAAAGGATGTGCATTGCAGTGATCCAAGCACTGACAACTCATGCAAACTAGAGAAACCAAAAAGGAGACTTTTGCCCGCATCATCCACACTATTGCGGGATTTCAGCAATATGCATGTCGAGGATGATATTGAGGCGTCAAAGCAGGTAAACAGAAATGGGAAAAAATCAGCCAAAGGCGAAAAACTTAGAACACAGGGTAACATCTCCCTCATTCGCATGCTGAAGAGTAATCTCCGGTTCTAG 2610 42.76 MEDGSPVQCPNTVTVRRNPHRRARATPAAKAAESNLTSAISSFPLQEILAMDVPQNPKDNSSASSSVQTSLSENLKVYLRVRPLQLKNLKKSGNPGDQNSSRSGHVWPQNPQKKKAAKEKNVKKKSNEACITINDDHSVTVCPPMALQETRRSKSEVYEGFSHVFSMESSQDEVYERMVSPLVEDFLKGKSGMLTALGPSGSGKTHTIFGSPRVPGMVPLALQHIFRTESSDSKTSRSYYLSIFEIYSEKGKGEKMYDLSADGGELTMQQFTIKGLKEVLISKAGEAESLVACAMTKRATAITNANSTSSRSQCIINVRRVANQDEVEDASNCAILTIADLAGAEKEKRTGNQGTRLLEANFINNTSMVFGLCLRSLFEHQRNPKKPLQKHFQNSLLTKYLRDYLEGKKRMTLILTVKAGEEDYLDTTFLLRQASPYMKIKFNNVVEPSNTNKRQLQTLCTFEEQKRTKYSVPEACVNEGKRHHKEDLLAHEEPSGHPKGTATESSRTELAGIERNHLILQNFSQAIWKTLKQYRDKLKSAENENQILREEIRQEKMRYFELEKQWQSTRCSTCSKKDCAEADSSVEVASNFELNSDLEEHRFNNSHKIIVNSFIKVKESEGKSPERRGSSLYEDINCCSKLDEVKEAHTDSIDETTPRNKCNTAKKLTYVEADDSCPTTNPIAFSTQQSHKLVKHDSCSSVELDKLSEQEESTSVESHLQIGSNIHCDAHACETQLVPDTSLNQSTSEESDRDSGALNEDQELLGEFPDSQHVPPTEDVESYQEQEHKKDVHCSDPSTDNSCKLEKPKRRLLPASSTLLRDFSNMHVEDDIEASKQVNRNGKKSAKGEKLRTQGNISLIRMLKSNLRF 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26935080 26944596 + MELO3C011020.2.1 Cme03g01871 323882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01871 869 MobiDBLite consensus disorder prediction 1 35 - -
Cme03g01871 869 MobiDBLite consensus disorder prediction 780 809 - -
Cme03g01871 869 PRINTS Kinesin heavy chain signature 189 210 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme03g01871 869 PRINTS Kinesin heavy chain signature 303 320 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme03g01871 869 PRINTS Kinesin heavy chain signature 335 353 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme03g01871 869 PRINTS Kinesin heavy chain signature 390 411 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme03g01871 869 Coils Coil 531 565 - -
Cme03g01871 869 Pfam Kinesin motor domain 120 435 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme03g01871 869 MobiDBLite consensus disorder prediction 87 125 - -
Cme03g01871 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 441 IPR027417 -
Cme03g01871 869 SMART kinesin_4 72 448 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme03g01871 869 Gene3D Kinesin motor domain 70 475 IPR036961 -
Cme03g01871 869 MobiDBLite consensus disorder prediction 487 507 - -
Cme03g01871 869 PANTHER KINESIN-LIKE PROTEIN KIF23 70 784 - -
Cme03g01871 869 MobiDBLite consensus disorder prediction 767 809 - -
Cme03g01871 869 PANTHER KINESIN-RELATED 70 784 IPR027640 GO:0003777|GO:0007018
Cme03g01871 869 MobiDBLite consensus disorder prediction 91 108 - -
Cme03g01871 869 ProSiteProfiles Kinesin motor domain profile. 74 440 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01871 K10401 KIF18_19; kinesin family member 18/19 - csv:101210482 1591.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01871 Cme-Chr3:26935080 Cme08g00695 Cme-Chr8:4606019 1.62E-26 dispersed
Cme03g01871 Cme-Chr3:26935080 Cme04g00238 Cme-Chr4:1868965 1.01E-22 transposed
Cme03g01871 Cme-Chr3:26935080 Cme11g00163 Cme-Chr11:1744215 6.25E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1139 . . . . . . . . . . . . . . . . . Bhi04g00138 . . . Hepe10g0163 . . Cla08g01415 Cam08g1894 Cec08g1471 Cco08g1604 Clacu08g1586 . Cre08g1369 . . . Cone20ag0437 . . . Cme03g01871 Blo17g00740 . Bda08g01213 . . Bpe05g00146 . . . . . Cma12g00402 . . Car15g00615 . . . . . . . . . . . . . . . . Lsi08g01310 Csa02g02143 Chy03g00784 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005587 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 37