Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01872 ATGGGGTTTCTTCAAACCCATTTTGTTTCTTCTTCCTCTGTTTTGTTTCACTCTCTGTTTTTGATCATCTTCTTTAAAGGCGTTTCTGGAGCTGGATTTACATTTGTAAATCGATGCGATTTCACTGTTTGGCCGGGAATTCTTGGCAACCCCCAATTGGAATCCACTGGGTTCGAGCTATCTCCCGGTGCGACGCGTTCATTTCAAGCGCCTCCAGGTTGGTCCGGCAGGTTCTGGGGTCGGACCGGCTGTTCGTTTGACCCGGCCACTGGTCAGGGTAATTGTCAAACGGCTGATTGTGGATCAAACCAAATAGAATGCAATGGCGCCGGAGCTACTCCGCCGGCGACTCTAGCAGAGTTTACGATCGGCGGAGGTGCCGGTGGGCAGGACTTTTACGATGTCAGTTTGGTCGACGGTTACAACATTCCGATGGTGGTCGATGCCACTGGTGGGAGCGGCGAGTGTCAGTCGACTGGATGCGCGGCGGAGCTGAACCGGCGGTGCCCGGCTGAGCTACGCGCTGGCGAAGGAAAGGCGTGTAGGAGCGCGTGTGAGGCGTTTGGGAACCCAGAATACTGCTGCAGCGGCGCGTACAACTCACCCGCCGCTTGTAAACCATCGATTTACTCGGAAATGTTCAAATCGGCTTGCCCTAAATCGTATAGCTATGCGTTTGATGACGCAACAAGCACTTTTACTTGTAGTGGAGCAGATTACACCATTACATTCTGCCCTTCGTCCGCAAGGTAA 753 52.99 MGFLQTHFVSSSSVLFHSLFLIIFFKGVSGAGFTFVNRCDFTVWPGILGNPQLESTGFELSPGATRSFQAPPGWSGRFWGRTGCSFDPATGQGNCQTADCGSNQIECNGAGATPPATLAEFTIGGGAGGQDFYDVSLVDGYNIPMVVDATGGSGECQSTGCAAELNRRCPAELRAGEGKACRSACEAFGNPEYCCSGAYNSPAACKPSIYSEMFKSACPKSYSYAFDDATSTFTCSGADYTITFCPSSAR 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26947101 26948231 - MELO3C030111.2.1 Cme03g01872 323883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01872 250 SMART tha2 33 246 IPR001938 -
Cme03g01872 250 CDD TLP-PA 33 245 - -
Cme03g01872 250 Pfam Thaumatin family 37 246 IPR001938 -
Cme03g01872 250 PANTHER OS03G0233200 PROTEIN 10 249 IPR001938 -
Cme03g01872 250 PIRSF PR5 3 250 IPR001938 -
Cme03g01872 250 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 10 249 - -
Cme03g01872 250 SUPERFAMILY Osmotin, thaumatin-like protein 33 247 IPR037176 -
Cme03g01872 250 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Cme03g01872 250 PRINTS Pathogenesis-related protein signature 56 65 IPR001938 -
Cme03g01872 250 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Cme03g01872 250 PRINTS Pathogenesis-related protein signature 131 147 IPR001938 -
Cme03g01872 250 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Cme03g01872 250 ProSiteProfiles Thaumatin family profile. 30 246 IPR001938 -
Cme03g01872 250 Gene3D Thaumatin 31 246 IPR037176 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01872 Cme04g00460 CCT
Cme03g01872 Cme04g00460 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01872 Cme-Chr3:26947101 Cme08g00938 Cme-Chr8:6173985 9.51E-125 dispersed
Cme03g01872 Cme-Chr3:26947101 Cme03g01873 Cme-Chr3:26956572 4.19E-95 tandem
Cme01g02489 Cme-Chr1:32960151 Cme03g01872 Cme-Chr3:26947101 1.50E-85 transposed
Cme03g01872 Cme-Chr3:26947101 Cme04g00460 Cme-Chr4:3668049 3.53E-97 wgd
Cme03g01872 Cme-Chr3:26947101 Cme08g00937 Cme-Chr8:6165372 3.80E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01872 - - csv:101204331 514.612