Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01873 ATGGCGGTGACTGGAACTCAATTTTTGTTGGCAATTCTAAATCTGCTGCTGTTGGTACCGGGTGGGTTTTCGACGAGCTTTACTTTTGTTAACAAATGTGATTTCACGGTCTGGCCGGGGGTTCTCTCGAACGGCGGCGTTCCACCGCTTCCCACTACAGGCTTCTCTCTTCAGAGTGGAGAGTCCAAGACGCTACCGGCGCCGGCGTCTTGGGGCGGGCGTTTCTGGGGAAGAACACTCTGTTCTGAAGATTCCACCGGGAAATTCTCTTGCGCTACTGGTGACTGTGGCTCTAACAAATTAGAGTGTACTGGAAACGGAGCAACCCCACCAGCCACTCTGGCGGAATTCACTCTCGACGGCTCCGGCGGGCTTGATTTCTTCGACGTCAGTCTGGTGGACGGTTACAATCTTCCAATGATGGTTGTGCCCCAAGGTGGTTCCGGCGATAACTGCACGAATACCGGCTGTGTTGTGGATCTCAACGGCGCGTGTCCGTCAGAGCTGCGCGTGACGAGTGCCGACGGAAGAGAAGGCGTCGCGTGTAAGAGCGCGTGTGGTGCTTTCAACCAACCGCAGTATTGTTGCACAGGCGCGTACCAAACACCGGACACTTGTCAGCCGTCGATGTACTCTCAGATCTTCAAGAAAGCGTGCCCACGCGCTTACAGCTACGCGTACGATGATAAGACGAGCACTTTCACATGCGCCAGTGCTGATTATGTCATTACATTCTGTCCATCGCCAAATACCAGCCAAAAGTCATCGGAGGCACAGAATTCTCCGGCAACTGCGAACCCATCTTCCGGCGGAGACGGTGCAATGGTATACGAAGGTGCATCCTTGATCCAAACCGATGCAGCGTCACCGCGAGTAACCGGAATATCAGCGATCGGTACGGTGGCGATTGGGTGGTTGTGGCAGCGGATGTTCCACTTCTGA 942 54.46 MAVTGTQFLLAILNLLLLVPGGFSTSFTFVNKCDFTVWPGVLSNGGVPPLPTTGFSLQSGESKTLPAPASWGGRFWGRTLCSEDSTGKFSCATGDCGSNKLECTGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMMVVPQGGSGDNCTNTGCVVDLNGACPSELRVTSADGREGVACKSACGAFNQPQYCCTGAYQTPDTCQPSMYSQIFKKACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSQKSSEAQNSPATANPSSGGDGAMVYEGASLIQTDAASPRVTGISAIGTVAIGWLWQRMFHF 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26956572 26959173 - MELO3C011018.2.1 Cme03g01873 323884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01873 313 PANTHER OS03G0233200 PROTEIN 15 272 IPR001938 -
Cme03g01873 313 PIRSF PR5 1 286 IPR001938 -
Cme03g01873 313 MobiDBLite consensus disorder prediction 251 268 - -
Cme03g01873 313 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cme03g01873 313 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cme03g01873 313 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cme03g01873 313 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cme03g01873 313 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Cme03g01873 313 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Cme03g01873 313 MobiDBLite consensus disorder prediction 251 270 - -
Cme03g01873 313 SMART tha2 27 247 IPR001938 -
Cme03g01873 313 Gene3D Thaumatin 25 247 IPR037176 -
Cme03g01873 313 CDD TLP-PA 26 246 - -
Cme03g01873 313 PANTHER BNAA02G17480D PROTEIN 15 272 - -
Cme03g01873 313 Pfam Thaumatin family 31 247 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01873 Cme-Chr3:26956572 Cme04g00460 Cme-Chr4:3668049 9.99E-155 dispersed
Cme03g01872 Cme-Chr3:26947101 Cme03g01873 Cme-Chr3:26956572 4.19E-95 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01873 - - csv:101204094 627.476