Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01875 ATTTGTTATTACCATATTAGCCCTCAAATTTCGGAGTTTCTCTGTCTTATAATCCCCACTCTCGTCCTTCATCTTCTTCGCGTCGATCCATTTTCATCGATACACAGAACAAGGACAACAACAAGAGCCTTTCTCTTTCTTTCCATTTCCTTACAACAAGACACCATGAGAGAAATTCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTCATTTGCGATGAGCACGGTATCGACGCCACCGGTAAGTACAACGGCGATCCTTCTTCTGATCTTCAATTGGAGAGGATCAATGTCTATTACAATGAGGCTTCTGGCGGTAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAACCTGGTACCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCTGATAATTTCGTTTTTGGTCAGTCCGGCGCCGGAAATAATTGGGCGAAAGGTCATTATACCGAAGGAGCTGAGTTGATTGATTCCGTTCTTGACGTTGTTCGTAAGGAGGCTGAGAATTGTGATTGCTTGCAAGGTTTTCAGGTTTGTCACTCCCTTGGAGGAGGCACTGGTTCTGGGATGGGAACCCTGTTGATATCAAAGATTAGAGAGGAATATCCAGATAGGATGATGCTCACATTCTCGGTTTTCCCTTCTCCCAAGGTCTCAGACACGGTTGTGGAACCATATAATGCCACTCTTTCAGTTCACCAATTGGTTGAGAATGCAGATGAATGCATGGTCCTTGATAATGAAGCTCTTTATGACATTTGCTTCAGGACCTTAAAGCTCAGCACTCCTAGCTTTGGTGACTTGAACCATTTAATCTCTGCAACCATGAGCGGAGTAACATGTTGCTTAAGATTCCCAGGTCAACTGAACTCAGACTTGAGAAAATTGGCAGTGAATCTAATTCCATTCCCTCGTCTTCACTTCTTCATGGTTGGATTCGCTCCACTAACCTCCCGCGGTTCCCAGCAGTACATCTCCCTCACTGTCCCAGAACTAACCCAACAAATGTGGGACGCAAAGAATATGATGTGTGCTGCCGACCCACGCCACGGCCGTTATCTAACCGCCTCGGCCATGTTCAGAGGAAGAATGAGCACGAAAGAAGTAGACGAACAGATGATCAATGTACAAAACAAAAACTCATCCTACTTCGTTGAATGGATCCCAAACAACGTGAAATCAAGCGTTTGTGACATACCTCCAAAGGGGCTGAAGATGGCATCAACATTCGTGGGAAACTCGACCTCGATTCAAGAGATGTTTAGAAGAGTGAGTGAGCAGTTCACGGCGATGTTTAGGCGCAAAGCTTTTCTGCATTGGTACACAGGGGAAGGAATGGATGAAATGGAGTTTACGGAAGCAGAGAGTAATATGAATGATTTGGTGGCTGAGTATCAACAATATCAAGATGCTACGGTTGATGATGATGCTGATTTTGATGATCGTGATCACGATGACGAATATGTCGACCAGTAA 1518 45.26 ICYYHISPQISEFLCLIIPTLVLHLLRVDPFSSIHRTRTTTRAFLFLSISLQQDTMREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVDDDADFDDRDHDDEYVDQ 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26978404 26982315 + MELO3C011016.2.1 Cme03g01875 323886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01875 505 Pfam Tubulin/FtsZ family, GTPase domain 58 268 IPR003008 GO:0005525
Cme03g01875 505 Gene3D Helix hairpin bin 431 487 IPR023123 -
Cme03g01875 505 SUPERFAMILY Tubulin C-terminal domain-like 301 486 IPR008280 -
Cme03g01875 505 PANTHER TUBULIN 56 496 IPR000217 GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Tubulin signature 163 187 IPR000217 GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Tubulin signature 108 127 IPR000217 GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Tubulin signature 208 229 IPR000217 GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Tubulin signature 150 161 IPR000217 GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Tubulin signature 189 207 IPR000217 GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Tubulin signature 247 267 IPR000217 GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Tubulin signature 427 455 IPR000217 GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Tubulin signature 65 85 IPR000217 GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Tubulin signature 233 246 IPR000217 GO:0005874|GO:0007017
Cme03g01875 505 MobiDBLite consensus disorder prediction 486 505 - -
Cme03g01875 505 Gene3D Tubulin/FtsZ, GTPase domain 56 319 IPR036525 -
Cme03g01875 505 PANTHER TUBULIN BETA-1 CHAIN-RELATED 56 496 - -
Cme03g01875 505 Coils Coil 465 485 - -
Cme03g01875 505 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 197 203 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cme03g01875 505 Pfam Tubulin C-terminal domain 318 439 IPR018316 -
Cme03g01875 505 SMART Tubulin_C_4 303 440 IPR018316 -
Cme03g01875 505 Gene3D - 320 430 IPR037103 -
Cme03g01875 505 PRINTS Beta-tubulin signature 145 156 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Beta-tubulin signature 302 315 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Beta-tubulin signature 209 221 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Beta-tubulin signature 269 281 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Beta-tubulin signature 322 338 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Beta-tubulin signature 368 386 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Beta-tubulin signature 469 487 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Beta-tubulin signature 434 445 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Beta-tubulin signature 386 400 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Beta-tubulin signature 98 115 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Beta-tubulin signature 165 183 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Beta-tubulin signature 287 296 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme03g01875 505 PRINTS Beta-tubulin signature 404 427 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme03g01875 505 CDD beta_tubulin 57 483 - -
Cme03g01875 505 SUPERFAMILY Tubulin nucleotide-binding domain-like 56 300 IPR036525 -
Cme03g01875 505 SMART Tubulin_4 104 301 IPR003008 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01875 K07375 TUBB; tubulin beta - csv:101204817 872.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01875 Cme-Chr3:26978404 Cme12g01071 Cme-Chr12:18608864 0 dispersed
Cme03g01875 Cme-Chr3:26978404 Cme04g02679 Cme-Chr4:32375590 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1117 . . Bda01g00482 . Bpe02g00346 . Bma04g00249 . . . . . . . Sed08g2609 . Cpe07g00363 Bhi04g00145 Tan02g2079 Cmetu03g2170 . Hepe10g0157 . Lcy13g1909 Cla08g01419 Cam08g1899 Cec08g1475 Cco08g1608 Clacu08g1590 . Cre08g1374 . . . . . . . Cme03g01875 Blo17g00745 . . Bda01g01531 Bpe02g01727 . . . . . . Cma12g00406 . . . . . . . . . . . . . . . . . . . Lsi08g01314 . Chy03g01381 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220