Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01889 TTCGTTCGCCGCTTCTACGTACTCTTTCTCTTTCTTCTCTCTCTGTCTTTTTTTTTCTTCCCTTTTTCTCTCTCTCTTTCCCTCCAATCTTCAAAATCCTCCATATCTCCCTCCCTTTTACCTCCATCTTTTCCGATGTCGAAGGCCGTCGAAGATCTCATCTTCCGCCACCGCCACTCCGATTATCGATTTCATCTCCTTAGCTCTCACTCTAACAATCGCGATATGTCGTCTTTCTCTTCTTCTTCTTCCTCAGCTCTAGCTCTTCCGCCTCAGTGTTGTCTTCAGTATCATCGGCCTTCTCCAACGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGAGGCACATTCTAAAGTTTCTACGATAGACTTGAAACGAGCATATGATATTAGTAACTCCGAGGCTTTGGCTAGTAGACAAGTCGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAGAAATTTAAGTTGCAGAAAAATTCGAAGTCTAAGACTCAAAAATCAGTAGATGAGCCTGTTGATAGTCCTAATCCATCTACTAACGGTCGGTATGACAGCTCGTTAGGTAAAGAGGCTGAAGATGGAACTCTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAGAAGAGGAGAATTTATGATATTACAAATGTTCTTGAAGGAATAGGCCTCATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGAGGCGAGAGGCGTGGACCTCAAGAGCTCAACGATCAAGTTGGTAGATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAAACTTGATGAACTCATAAGGAAGAAACAAGAACTTCTAAGAAATCTCGAGCAAAATGCAAATTACAGGAAGAACCTTTTTATAACAGAAGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAAGCTAGCTGTATCGAAGTACCCGATCCAGACGAGGAGGCTTGTTTTTCTGAGAGGCAATGTAGAATGATCATCAAAAGCACCACTGGGCCAATTGATTTATACCTCTTGAGGACTGCAAAACAAGAGCTGGAAGAAAATACTTCCAAACAAGCAAAACTATGCTTAGCACAGCAGAGTCATCCTAACATATTTACCAACAATACTTATTCTCCTTTCCAAGAATTTCATGGAATGCAAAGAATTTTACCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCACAAGTGAGTATTACGCATTTATGGGGTGAGGAACACAACTTTTAA 1341 41.01 FVRRFYVLFLFLLSLSFFFFPFSLSLSLQSSKSSISPSLLPPSFPMSKAVEDLIFRHRHSDYRFHLLSSHSNNRDMSSFSSSSSSALALPPQCCLQYHRPSPTSDQSNACDGRLAPEAHSKVSTIDLKRAYDISNSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKFKLQKNSKSKTQKSVDEPVDSPNPSTNGRYDSSLGKEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGERRGPQELNDQVGRLKDEVKSLYADERKLDELIRKKQELLRNLEQNANYRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRMIIKSTTGPIDLYLLRTAKQELEENTSKQAKLCLAQQSHPNIFTNNTYSPFQEFHGMQRILPLHNNIDDDYWFQSNSQVSITHLWGEEHNF 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27035350 27039926 + MELO3C011003.2.1 Cme03g01889 323900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01889 446 MobiDBLite consensus disorder prediction 143 168 - -
Cme03g01889 446 PANTHER TRANSCRIPTION FACTOR E2F 56 443 IPR015633 GO:0000978|GO:0006357
Cme03g01889 446 Gene3D - 262 372 - -
Cme03g01889 446 SUPERFAMILY E2F-DP heterodimerization region 267 370 IPR037241 -
Cme03g01889 446 CDD E2F_DD 266 370 IPR032198 GO:0046983
Cme03g01889 446 Coils Coil 278 305 - -
Cme03g01889 446 SMART E2F_TDP_2 200 255 IPR003316 GO:0005667|GO:0006355
Cme03g01889 446 Gene3D - 196 257 IPR036388 -
Cme03g01889 446 MobiDBLite consensus disorder prediction 187 203 - -
Cme03g01889 446 Pfam E2F transcription factor CC-MB domain 271 370 IPR032198 GO:0046983
Cme03g01889 446 Pfam E2F/DP family winged-helix DNA-binding domain 207 255 IPR003316 GO:0005667|GO:0006355
Cme03g01889 446 PANTHER TRANSCRIPTION FACTOR E2FC 56 443 - -
Cme03g01889 446 MobiDBLite consensus disorder prediction 143 212 - -
Cme03g01889 446 SUPERFAMILY Winged helix DNA-binding domain 196 255 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01889 K06620 E2F3; transcription factor E2F3 - csv:101211469 705.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01889 Cme-Chr3:27035350 Cme05g00246 Cme-Chr5:1809326 1.88E-71 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41072 PF16421 E2F_CC-MB 4.30E-27 No_clan Cme TF